KEGG   Populus trichocarpa (black cottonwood): 18103845
Entry
18103845          CDS       T01077                                 
Name
(RefSeq) polyadenylate-binding protein 1
  KO
K14396  polyadenylate-binding protein 2
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    18103845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    18103845
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     18103845
SSDB
Motif
Pfam: RRM_1 HDV_ag YscJ_FliF_C HAP1_N RRM_7 Lge1 CC149 CCDC22_CC
Other DBs
NCBI-GeneID: 18103845
NCBI-ProteinID: XP_006376950
UniProt: U5FZN4
Position
12:13286696..13290430
AA seq 226 aa
MDHLHDHEEDEHEHEVYGGEIPDEGEMDADVDMSSRAEEDEYQDPNSKDLEDMKKRLKEI
EEEAGALREMQAKVEKEMGAVQDSPGASATQAEKEEVDSRSIYVGNVDYSCTPEEVQQHF
QSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPG
MKQFRGRRPSPYGLRSRRPFMPAPFYPAYGYGRVPRFRRPMRYRPY
NT seq 681 nt   +upstreamnt  +downstreamnt
atggatcaccttcacgatcacgaagaggacgagcacgagcacgaggtctacggaggagaa
atccctgatgaaggagagatggatgccgatgttgacatgtcgtctagagctgaagaagat
gagtaccaagaccctaactccaaggatttagaggatatgaagaaaagattgaaagagatc
gaagaagaagccggtgcactacgtgaaatgcaggctaaggttgagaaagagatgggagct
gttcaagattctcctggtgcttctgctactcaagctgaaaaggaggaggtggattcccga
tccatttatgttggtaatgtggattattcttgtacccctgaagaagtgcagcagcatttt
cagtcctgtggaactgtgaatagagtgactattttgactgacaagtttggtcaaccaaag
ggatttgcttacgttgagtttgtagaggttgatgctattcagaatgctctcttattaaat
gaatcagaacttcatggccgccagttaaaggtctctgcgaagcgaaccaatgttcctgga
atgaagcaatttcgaggaaggcgcccaagcccttatgggctcaggtcccggaggccattc
atgccagctcccttctatcctgcatatggttatggaagggttccgaggttcaggagacct
atgcgatacaggccatactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system