KEGG   Populus trichocarpa (black cottonwood): 18104862
Entry
18104862          CDS       T01077                                 
Name
(RefSeq) polyadenylate-binding protein 2
  KO
K13126  polyadenylate-binding protein
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03015  mRNA surveillance pathway
pop03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    18104862
  09123 Folding, sorting and degradation
   03018 RNA degradation
    18104862
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    18104862
   03041 Spliceosome [BR:pop03041]
    18104862
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     18104862
   mRNA cycle factors
    Stress granule specific factors
     18104862
Spliceosome [BR:pop03041]
 Complex C
  Other components
   Complex C specific factors
    18104862
SSDB
Motif
Pfam: RRM_1 PABP RRM_occluded RRM_5 RRM_3 RRM_7 MARF1_RRM1 SET_assoc
Other DBs
NCBI-GeneID: 18104862
NCBI-ProteinID: XP_006374904
UniProt: U5FRW2
Position
14:1566296..1572754
AA seq 651 aa
MAQIQLHQSGASVPGPNGVAAGPGAIQFVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSV
RVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGMAN
IFIKNLDKGIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLN
GMLVNDKQVYVGHFLRKQDRDGALYSIKFNNVFVKNLAESTTDEELKNIFAEHGAITSAV
VMRDADGKSKCFGFVNFESADDAAKAVEALNGKKIDGEEWYVGKAQKKSERELELKGRFE
QSMKETVDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAF
STPEEASRALAEMNGKMLISKPLYVALAQRKEERRARLQAQFSQMRPVTMAPSVASRMPM
YPPGAPGMGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQ
RPGGRRGGGPVQQTQQPVPLMQQQMLPRGRVYRYPPGRNMPDVPMPGVAGGMLSVPYDMG
GMPIRDAAQPMPITALATALANATPEQQRTMLGESLYPIVDQLEHDSAAKVTGMLLEMDQ
TEVLHLLESPEALKAKVAEAMEVLRTVAAQQQINNQADQLGSLSLNDNLVS
NT seq 1956 nt   +upstreamnt  +downstreamnt
atggcgcagattcagttgcatcaatcgggggcttcggtaccgggacccaacggagtggcg
gcgggacctggagcgatccagtttgtgccgacttcgctttatgttggtgatcttgacttc
aacgtgactgattctcagctttacgacgtgtttaatcaggtcggccaggtggtttcggtt
agggtttgtagggatttgagtaccaggcgatctcttggctatggttatgttaactatagc
aaccctcaggatgctgcaagggcattggatgtcttgaactttactccactcaataacaag
cctatcaggatcatgtattcccatcgggacccaagtattcgtaagagtggcatggcaaat
atatttatcaagaacctggacaagggtattgatcacaaagctttacacgacacattttct
tcatttggcaatattctttcttgcaaagttgctactgatgcttctggccagtccaaaggc
tatggttttgtacaatttgacagcgaggaggctgcacaaaatgcaatagataaattaaat
ggcatgttggtcaatgataaacaagtgtatgttggacactttcttcgcaaacaggacaga
gatggtgctctatatagcataaaattcaacaatgtatttgtgaaaaatctggctgaatcc
acaacagatgaagagttgaagaatatttttgctgaacatggagcaattactagtgctgtg
gtgatgagggatgctgatggtaaatcaaaatgttttggatttgttaattttgaaagtgca
gatgatgctgccaaagctgttgaggctcttaatggcaagaaaatcgatggtgaggagtgg
tatgttgggaaagcccagaaaaagtctgaaagagagcttgaactgaaagggcgatttgag
cagagtatgaaggagactgttgacaaatttcaaggcttgaatttgtatatcaagaatcta
gatgatagcatcaatgatgaaaaactcaaggaattgttctctgactttggtgctattact
tcgtgcaaggtcatgcgtgaccctagtggtattagcagaggttctggatttgttgccttc
tcaactcctgaagaagcatctcgagctcttgctgagatgaatggaaaaatgttgatcagc
aaacccctgtatgttgcccttgctcaacggaaggaagagagaagagcaagacttcaggca
caattttctcaaatgaggccagttaccatggcaccttcagttgcttctcgtatgccaatg
tatcctcctggtgctccaggtatgggacaacaatttctgtatgggcaaggacctccagcc
atgatgcctccccaggctggatttggctaccaacagcaacttgtccctggaatgaggcct
ggtggtgccccaatgccaaatttctttgttcctctggttcagcagggtcagcaaggccag
cgacctggagggcgacgtgggggtggtcctgttcaacagacccagcagccagtccctctc
atgcagcaacagatgcttccgaggggacgcgtgtatcgttacccaccaggtcgcaacatg
ccagatgtaccaatgccaggtgttgctggaggcatgctttctgttccttatgacatgggc
ggcatgccaatacgtgatgccgcacaacccatgcccattactgctttagctactgccctg
gcaaatgcaacacctgaacagcagaggacgatgctgggtgaaagtctataccccatagtg
gatcagcttgagcatgattcagcagccaaggttacaggcatgcttctggagatggatcaa
actgaggtgttgcaccttcttgagtcaccagaggctttgaaggcaaaagtggcagaagct
atggaggtccttaggactgtagctgctcagcagcagatcaacaatcaagcggatcagctt
gggtcgctgtctctgaatgacaatcttgtctcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

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