KEGG   Populus trichocarpa (black cottonwood): 7459076
Entry
7459076           CDS       T01077                                 
Name
(RefSeq) putative pentatricopeptide repeat-containing protein At2g02150
  KO
K17710  pentatricopeptide repeat domain-containing protein 1
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pop03016]
    7459076
   03029 Mitochondrial biogenesis [BR:pop03029]
    7459076
Transfer RNA biogenesis [BR:pop03016]
 Eukaryotic type
  3'processing and CCA adding factors
   3'processing factors
    7459076
Mitochondrial biogenesis [BR:pop03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    7459076
SSDB
Motif
Pfam: PPR_2 PPR_1 PPR PPR_3 PPR_long MRP-S27 TPR_19
Other DBs
NCBI-GeneID: 7459076
NCBI-ProteinID: XP_002315826
Position
10:complement(12153588..12160549)
AA seq 781 aa
MRHIEAAIIFLFKMLISLRNLGSSLPRRVSPPCNHHLSSIFSSPSTTTTRACLISCCFTG
VLCILRFPFVTKSNSNPSNFFDVLDKVSMTKIIQQDQWNDPRVVGSIQSSLAPIWVSRVL
VEFKQDPKLALKFFKWAKTRVGFRHTTESYCILAHILFYARMYFHANNILKELVLSSWVL
PGSDVFEILWTTRNVCVPGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNA
FLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMG
LTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAF
EFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDAN
CKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNL
QAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTE
MKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGL
VQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTA
MIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKG
IIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGLIHGNSNPAVPNIQTRDDLDLSNFT
K
NT seq 2346 nt   +upstreamnt  +downstreamnt
atgaggcatattgaagcagctatcattttcctcttcaaaatgttaatttctctccgcaat
ttgggtagcagtttacctcgaagagtaagccctccttgtaatcatcacctctcttccatt
ttctcttcaccttcaacaacaactacacgtgcttgtttaatatcttgctgcttcactggc
gtcctttgcatacttaggttcccatttgtaaccaaatcaaactcaaacccctccaatttt
tttgatgttttagacaaagtttcaatgactaaaatcattcaacaagaccaatggaatgac
ccaagagtcgttggttcaattcagtcttccttagccccaatatgggtgtctcgggttttg
gttgaattcaaacaagatccaaaattggctttgaaattcttcaaatgggctaaaacccga
gttgggtttcgccacactactgaatcctattgtatattagcgcacattttgttttatgct
agaatgtactttcatgctaataatattctgaaggaattggttttatccagctgggttttg
ccgggctctgatgtttttgaaattttatggactacgaggaatgtttgtgttccagggttt
ggtgtttttgatgctttgtttagtgttttggttgaactaggaatgcttgaggctgctggt
cagtgttttttgaggatgaccaagtttagggtgttgccaaaggcacggtcttgtaatgcc
tttttgcataggctgtctaaggcaggggaaggggacttatcaagggatttttttagggac
atggttggggcaggtattgccccaacggtatttacatataatattatgataggtcatgtg
tgcaaagaaggggatatgctgactgctagaagcttgtttgaacagatgaaaaagatgggg
ttaacgccagatattgttacatataacacacttattgatggatatggtaagattgggttg
ctggatgaatctgtttgcttatttgaagaaatgaagttcatgggttgtgaacccgatgta
ataacctacaatgccttgattaactctttctgtaaatttaaaggaatgcttagagctttt
gaattttttcgtgagatgaaggataaagatttgaaaccaaatgtcatatcttatagcaca
ttaatcgatgctttatgcaaggaggggatgatgcaaatggcaattaaattttttgtggat
atgacccgtgttggtttgttacccaatgaattcacatatagttctttaattgatgcaaac
tgtaaagctggcaatctaggtgaagctttcatgctggctgatgagatgttgcaggaacat
gttgacttgaacattgttacatacacgactttgctggatggcctttgtgaagaagggatg
atgaacgaagcagaagagttatttagggcaatggggaaagctggggtaactcctaacctg
caagcttatactgcccttattcatgggcacatcaaggttaggagcatggataaagccatg
gagttattcaatgaaatgagagaaaaagatatcaaaccagacatattgctttggggaacc
attgtttggggtctttgcagtgaaagtaagcttgaagaatgtaagattataatgactgaa
atgaaggagtctggtataggtgccaaccctgtcatatatacaacactaatggatgcttac
tttaaggcagggaatcgcacagaagcaatcaatctgctagaagagatgcgggacttgggt
actgaggttacagttgtgaccttttgtgcattaattgacggtttgtgcaaaaggggttta
gttcaagaggcaatttattactttggcaggatgccagaccatgatttacaacccaatgtt
gcagtttatacagcccttattgatggtctttgtaaaaataattgtattggagatgcaaag
aagctgtttgatgaaatgcaagacaaaaatatgattccagataaaattgcttatactgca
atgatagatggaaatttgaagcatgggaactttcaagaagcattgaatatgcgaaacaag
atgatggaaatgggtatagaacttgatctgtatgcatatacgtccctggtctgggggttg
tcacaatgtggccaagtgcagcaagcaaggaagtttcttgctgagatgattggaaagggt
atcattcctgatgagactctgtgtactcgactattgagaaagcattatgaactaggaaat
atcgatgaagctattgaactgcaaaatgaattggtggaaaagggtctaatccatggcaac
agcaatcctgcagttcctaatattcaaactcgagatgatttagatttgtctaattttaca
aaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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