KEGG   Populus trichocarpa (black cottonwood): 7460257
Entry
7460257           CDS       T01077                                 
Name
(RefSeq) THO complex subunit 1
  KO
K12878  THO complex subunit 1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03013  Nucleocytoplasmic transport
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7460257
  09122 Translation
   03013 Nucleocytoplasmic transport
    7460257
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7460257
   03041 Spliceosome [BR:pop03041]
    7460257
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     7460257
Spliceosome [BR:pop03041]
 Complex C
  Other components
   EJC/TREX
    7460257
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    7460257
SSDB
Motif
Pfam: efThoc1
Other DBs
NCBI-GeneID: 7460257
NCBI-ProteinID: XP_024452918
Position
3:complement(19673776..19683976)
AA seq 608 aa
MEEFRRAILQSGPIESFALQTVQEFIKPQKQTKLVQDENQLLENMLRTLLQELVSSSAQS
REEIMLYGKSIEDGEDSQGQIPRLLDVVLYLCERDFVEGGMIFQLLEDLTEMSTMRNCKD
IFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKEPPAAISLDFNFYKTMWSLQEYFCDPSLTLSPIKWQKFSL
SLMVILNAFEAQPLSEEEGSANNLEEEAASFNIKYLTSSKLMGLELKDPSFRRHVLVQCL
ILFDYLKAPGKNDKDLTSESMKEEIKSREEHVKKLLEMTPPKGKDFLHKVEHILEREKNW
LWWKRDGCPPFEKQPIENKTVQDGGKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVR
TPAITDYWKPLAEDMDPSASIEADYHHKNNRVYCWKGLRVSARQDLDGFSRFTDHGIEGV
VPLELLPPDVRSKHQAKPNDRSKRAKKDEPKGASHQVEDNQIATPASEIDGEGIRTDLEA
SVTPMDSDAMATTSNISQSSTPTPDEHQKQSPDTDGGQEAGHIEADAEAEAGMIDGETDA
EVDLEAVG
NT seq 1827 nt   +upstreamnt  +downstreamnt
atggaagaattcaggagggctatattgcagtctggtccaattgaatcttttgctctccag
accgttcaagaatttattaaacctcagaagcaaactaaattagtgcaagatgagaatcaa
ttgttggaaaatatgctccggacattgcttcaggagctcgtgtcatcttctgctcagtcg
agggaggaaataatgttgtatgggaagtccattgaggatggtgaagactcacagggtcaa
attcctcgtctgctagatgttgttctgtatctctgtgagagagattttgttgagggtggt
atgatattccagttgttggaagatttgacagaaatgtctacaatgagaaattgcaaggat
atttttggttacatagagagtaagcaagatatacttggaaagcaagaactttttgctcgt
ggaaaacttgtgatgttgagaacatgtaatcaacttctccgacgcctttcaaaggcaaat
gatgtcgtgttttgcggacgaattctgatgtttctagcacacttttttccactatctgaa
cgctcagctgtaaacattaaaggagttttcaacacatcaaatgagactaaatatgagaaa
gagccaccagctgccatttctcttgacttcaacttctataaaaccatgtggagtttacag
gagtacttttgtgacccttcccttactctttctccaatcaagtggcaaaaattctcattg
agtttgatggtcatcttgaatgcctttgaagctcagcctttgagtgaggaagaaggaagt
gctaacaatttggaggaagaggcggcatcatttaacataaagtatctcacaagcagtaaa
ctgatgggtttagagttaaaagatccaagttttcgacgccatgttcttgtgcagtgtctc
atactgtttgactaccttaaggctccaggaaagaatgacaaagatttaacatctgaaagc
atgaaagaagaaataaaatctcgcgaggagcatgtaaagaagttgcttgaaatgactcca
cctaaaggaaaagattttcttcacaaggttgagcatatactagaacgtgaaaagaattgg
ctgtggtggaaacgtgatggttgccctccatttgaaaagcagccaatagagaacaagaca
gtccaagatgggggtaaaaaacgtaggccaaggtggaggctaggaaataaagagctctca
caattgtggaagtgggcagatcagaatccgaatgccttgactgatcctcaacgtgttcga
actcctgccatcacagattactggaaaccattggcagaagatatggatccatcagctagc
atagaagctgattatcaccacaagaataaccgggtttattgctggaaaggtctccgtgtc
tctgctaggcaggatttggatggtttctctcgatttactgaccatggtattgaaggagtt
gttcctttagaactattgccaccagatgtccggtccaaacaccaagctaaacccaatgac
aggtctaaacgtgccaaaaaggatgagccaaagggtgcttcacatcaagtggaagataat
cagattgcaacacctgcaagcgagattgatggtgaaggaatcagaactgatcttgaagcc
tctgttacaccaatggactctgatgccatggccacgaccagcaatatttcacagagcagc
actcctacaccagatgaacatcaaaagcagagccccgacacagatggtggtcaagaggca
ggccacatagaagcagacgctgaagcagaggcagggatgatagacggagagactgatgcg
gaggtagatttagaagcagttggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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