KEGG   Populus trichocarpa (black cottonwood): 7461791
Entry
7461791           CDS       T01077                                 
Name
(RefSeq) serine--tRNA ligase, chloroplastic/mitochondrial isoform X1
  KO
K01875  seryl-tRNA synthetase [EC:6.1.1.11]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop00970  Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    7461791
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:pop01007]
    7461791
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pop03016]
    7461791
Enzymes [BR:pop01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.11  serine---tRNA ligase
     7461791
Amino acid related enzymes [BR:pop01007]
 Aminoacyl-tRNA synthetase
  Class II (C/G)
   7461791
Transfer RNA biogenesis [BR:pop03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Other AARSs
    7461791
 Prokaryotic type
    7461791
SSDB
Motif
Pfam: tRNA-synt_2b Seryl_tRNA_N ArnB_C
Other DBs
NCBI-GeneID: 7461791
NCBI-ProteinID: XP_002301073
UniProt: A9PFH5
Position
2:7316597..7320562
AA seq 523 aa
MGLQCYFGGTTIQTLKLAAIPASSRFILKPISKTLVLNPFSRHNYVICPQRNPFKLLVRA
LSSTAVQTAPITESLDNKVVKPQWKAAIDFKWIRDNKDAVALNIKNRNSNANLELVLELY
EKMLAVQKEVERLRAERNAVANKMKGKLEISERQKLIEEGKNLKEGLATLEEDLVKLTDE
LQLEAQCIPNLTHPLVPIGGEDSSTVRKMAGTPRDFGFPVKDHLQLGKELDLFDFDAAAE
VSGSKFYYLKNEAVMLEMALVNWTLSEVMKKGFTPLTTPELVRSSVVEKCGFQPRGDNTQ
VYSIEGSDQCLIGTAEIPVGGIHMDTILAETQLPLKYVAYSHCFRTEAGAAGTATRGLYR
VHQFTKVEMFVLCRPEESDSYHEELIKIEEDLFSALGLHYKTLDMASGDLGAPAYRKFDV
EAWMPGLGRYGEISSASNCIDYQSRRLGIRYRPSEPTPAPPKKGKGSLAPTQFVHTLNAT
ACAVPRMIVCLLENYQQEDGSVIIPGPLRAFMGGLELITPKST
NT seq 1572 nt   +upstreamnt  +downstreamnt
atgggtttacagtgttattttggagggacaactatacaaaccctaaagttagccgcgatt
cctgcttcttcacgtttcattttaaagccaatctccaaaaccctagtcctaaatccgttt
tcccgccataactatgttatatgtccacaaagaaatccgtttaagcttctggttagagct
ctctcttccacggctgtccagacagcgcctataacggaaagcttggataataaagttgtg
aagccgcaatggaaagcggcaatagatttcaagtggataagggataacaaagacgcggtg
gctttgaatataaagaacaggaactcaaatgctaatttggagcttgtccttgagctctat
gagaaaatgttggctgttcaaaaggaagttgaacggcttcgtgcggaaaggaatgcagta
gcaaacaagatgaagggaaagctagagatatcagagcgtcaaaaactgattgaggaagga
aagaatctaaaagaagggcttgcaactttggaagaagacctggttaaacttacagatgag
cttcagctggaagcacagtgtatacctaacttgactcacccacttgttccgattggagga
gaagatagttcaactgtgagaaagatggcaggtactccacgtgactttggcttccctgtc
aaggaccaccttcaacttgggaaagaactagatctctttgattttgatgcagcagcagag
gtgagtggttcaaaattctactatctgaagaatgaagcagttatgctggagatggccctt
gtcaactggactctctcagaagttatgaaaaagggatttacacctctaacaactccagaa
cttgtcagatcctctgttgttgagaaatgtggattccaacctcgtggtgataatactcag
gtttactctatcgagggtagtgatcaatgcctcattggcactgcagagattcctgtggga
ggaattcacatggatactatccttgctgagacacagttgccattaaagtatgtggcatat
tcccattgcttccgtacagaggctggtgctgcaggcacggcaacaaggggtctttaccga
gttcaccagttcactaaggtggagatgtttgttttgtgccgaccagaggagagtgattct
taccatgaggagcttatcaaaattgaagaagacctcttttctgccctagggttacattat
aaaactttggatatggcctctggggatttaggtgcacctgcttaccgcaaatttgatgtg
gaggcatggatgcctggtttaggacggtatggtgagatatctagtgcctcaaattgcatc
gactaccaaagtcgccgactagggatccggtaccgtccatcagaacctacaccagcccct
cctaaaaagggcaaaggcagccttgctccaacacagtttgtgcacacattaaatgcaacg
gcctgtgcagttcctaggatgattgtgtgtctgctggaaaactaccagcaagaagatggc
tctgttattatccccgggccattgagggcattcatgggagggctggagcttataactccc
aaatccacttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (31)   

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