KEGG   Populus trichocarpa (black cottonwood): 7462614
Entry
7462614           CDS       T01077                                 
Name
(RefSeq) ATP-dependent RNA helicase eIF4A isoform X1
  KO
K03257  translation initiation factor 4A
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7462614
   03012 Translation factors [BR:pop03012]
    7462614
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pop04147]
    7462614
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     7462614
   mRNA cycle factors
    Stress granule specific factors
     7462614
Translation factors [BR:pop03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    7462614
Exosome [BR:pop04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   7462614
  Exosomal proteins of bladder cancer cells
   7462614
SSDB
Motif
Pfam: Helicase_C
Other DBs
NCBI-GeneID: 7462614
NCBI-ProteinID: XP_052310329
Position
7:complement(3679690..3684477)
AA seq 223 aa
MAVTDAIEEPSPSSNFSQPPPRHFYVTVVDRLHFKMDTLVHLLGVAARRPALPIVVCCTS
RDQLDAVCSAVSNLPFISLASLYSDLAESDRNVILEEFRKATVRWSQIVNAGQSAGGGSG
GETGNNNDESNTNNNKTKSHMIVVTDACLPLLALGEAPVSARVLINYELPSKETYLRRMA
TCLAADGIVINVVVGGEVITLKNIEESSSLVIAEMPINISEIL
NT seq 672 nt   +upstreamnt  +downstreamnt
atggcagtaacggatgcaattgaagaaccatccccttcttctaatttcagccaaccacca
ccgcgtcacttctacgtgactgtcgtcgacagactccacttcaaaatggacacgttggtc
catttattaggagttgctgcccgccgccctgccctacccattgtggtttgttgcacttct
cgcgatcaactcgacgccgtctgctccgccgtctccaacctccccttcatttctcttgcc
tctctgtacagtgacctagctgaatcggaccgaaatgtaattttagaggaatttaggaaa
gcaacagtgaggtggagccaaattgtaaatgctggtcaatcagccggcggcggcagcggt
ggtgaaactggaaataataatgatgaaagtaatactaacaataataagactaaatcacat
atgatagttgtaacagatgcctgccttccgcttcttgcgctgggcgaagcgccggtttcc
gctcgtgttctgattaattatgaattgccatcaaaggaaacatatttgagacgcatggcc
acttgcttggctgcagatgggattgtaatcaatgtagttgttggtggtgaagtgataact
cttaaaaacattgaagaaagcagcagccttgtcatagctgaaatgcccataaatatttct
gagattttatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (1)   
   Pfam (1)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system