KEGG   Populus trichocarpa (black cottonwood): 7466073
Entry
7466073           CDS       T01077                                 
Name
(RefSeq) uncharacterized protein LOC7466073 isoform X2
  KO
K06100  symplekin
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    7466073
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pop03021]
    7466073
   03019 Messenger RNA biogenesis [BR:pop03019]
    7466073
Transcription machinery [BR:pop03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     7466073
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     7466073
    U7-dependent histone pre-mRNA processing factors
     7466073
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N
Other DBs
NCBI-GeneID: 7466073
NCBI-ProteinID: XP_024443344
Position
16:12091093..12103427
AA seq 1357 aa
MVAMTKSSSRERLASLINSAKSASDIPSKLQTLRQLNQILQQQENANSLSEFLPRIFEFQ
SDQHSPVRKFATEMIGEIGLKHLEFVPEIVPVLMLVLEDLVPAVARQAITCGISLFRATL
EKLAIQGLYTSELDDLLKSSWSSMLEFKEKIYSIAFQLGSGGVRLLALKFVEEVILLYTP
DPYGTSEPPSHEGSSVEFNISWLRGGHPVLNVGDLSIEASRKLSLLLDQLRMPTVKSISN
LMIIVLVNSLATIAKKRPPCYGRILPVLLGLDPSNSVIEGMHGYGAHHALKNAFLTCLKC
NHLGAAPWRDRLVGVLKEMKAGELAEEALQVLRSNGSVEEAKEDFLVAQEEKLLIKSSDG
IPNNSARKRSGPEDSIDLADLAKDDDVSGKRVKSSPSVSEESSKELDHRANKKDDDNGPV
QQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMANMRYLPTGHPQAEGDDESLLN
MTIVGSDTRAKYPSSFLTNVLSLSSSFPPIAAQLNAGHSVSKDIPTTDEEELQTTTDEEE
LQTTKDEEELHVAAADVADVYTGKAHSAEDELMPAGLPASSNVDLSGMQMDGLAISSNIH
DFENLDSEIPGLDSSARNDVFSETMGASSLVSTDIEDASQEQGTSLGTRSNQEVLPSISN
DRSEELSPKAAATDSNSLISSTATSVRLHQPLVLPKMSAPVVNLVDEQKDQLHNLAFIRI
IEAYKQIAVAGSSQFRLSLLASLGVEFPSELDPWELLKKHILSDYVVHEGHELTLHVLYR
LFGEVEEEHDFLSSTTAASVYEMFLLTVAEMLRDSFPPSDKSLSRLLGEAPYLPNSIFSL
LESLCSPGNIDKAEELQSGDRVTQGLSTVWSLILLRPPIRESCLKIALQSAVHHLEEVRM
KALRLVANKLYPLSSIAQQIEDFAKEKLLSVVNSDATESMDAEGSFTESQKDSILEKPSN
EHQSMSAISKDISSETHQSCTSESVSSLSISEAQRCLSLYFALCTKKHSLFRQIFIVYKS
ASKAVKQAVNRHIPILVRTMGSSSDLLEIISDPPIGSENLLMQVLQTLTEGAVPSPELLF
TIRKLYDSKIKDAEILIPILPFLPRDEILLIFPHLVNLPLDKFQIALARTLQGSSHSGTM
LSPAEVLIAIHGIDPDRDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLL
FMRTVLQAIGAFPALVEFIMEILSRLVSKQIWKYPKLWVGFLKCALLTKPQSFNVLLQLP
PPQLENALNRTAALKAPLVAYASQPNIKSSLPRSVLVVLGIAPDPQTSSQAQTSLAQTGD
TNNSDKDVTVENSKTGETSNSVKEVLTEKSKESSVAS
NT seq 4074 nt   +upstreamnt  +downstreamnt
atggtagcaatgacgaaatcgagttcaagagaaagactagcgagtctcatcaactcagcc
aagtctgcctctgacataccttcaaagctccaaactttgcgtcaattaaaccaaattttg
caacaacaagaaaacgctaactcactctctgagttccttcctcgaattttcgagtttcag
tctgatcagcactctcctgttcgcaaatttgccactgagatgattggagagattggattg
aagcatttagaatttgtgcccgaaattgttccggttttaatgttagttttggaagatctt
gtaccggctgttgctagacaagctattacttgtgggatcagtttgtttcgggctactctc
gaaaaacttgcaattcagggtctttatactagcgagctggatgatttgcttaagtcttcg
tggtcatcgatgttagagttcaaggaaaaaatttactccatagcttttcagctgggaagt
ggtggtgtaagattgctggcactgaagtttgttgaagaagtcattcttctttacactcct
gatccttatggcacttcagagcccccttctcatgaaggatcaagtgtggaatttaacata
tcatggctccgtgggggccaccctgtactaaatgttggagatttgtcaattgaggccagc
agaaaattgagtttattgctcgatcagcttaggatgccaacagtgaaatctatcagtaac
ttaatgatcattgtgcttgttaatagccttgccacgattgcaaagaaaaggcctccatgc
tatggacgcattctgccagttttacttggtttggatccctcaaactctgttattgaaggg
atgcatggttatggggcacatcatgctttaaaaaatgccttcctcacctgcttgaagtgc
aatcacctgggtgctgcaccgtggcgggatcgtttagttggtgttctaaaagagatgaaa
gcaggagagttggcagaggaagcgctacaagttttaaggagcaatggaagtgtagaggag
gcaaaggaagattttctagttgcacaggaagaaaaactcttaattaagtcatctgatggc
attccaaataattcagcaaggaaacgatctggaccagaagacagtattgatttggctgat
ttggctaaagatgatgatgtgtctggaaaacgtgtcaaatcatcccccagtgtctcggag
gaatcatctaaagagttggatcatagagctaacaaaaaagatgatgataatggacctgtg
cagcaacttgttgctatgtttggagccttggttgctcaaggtgaaaaagctgttggttct
ttggagattcttatttcaagcatctctgctgacttgttagctgaagtagtgatggctaac
atgcgctaccttcctaccggtcatccccaagcggaaggagatgatgagtcactattgaac
atgactattgttggcagtgacactagagccaagtatccatcatcttttctgactaatgtt
ctttcactttctagttccttcccacctatagctgcacaactgaatgctggtcattcagta
tccaaagacataccgacaacagacgaggaagaactgcagacgacaacagacgaggaagaa
ctgcagacaacaaaagacgaggaagaactccatgttgcagcagctgatgtcgctgatgta
tatactggaaaagctcatagtgctgaagatgaactgatgcctgcaggtttacctgcttct
tcaaatgtcgatttatctgggatgcagatggatggtttggctatttcatctaatatccat
gattttgagaatttagacagtgaaatacctggtctagattcttctgctcgtaatgatgta
ttttcagagaccatgggtgcttcttcactggtctctactgatattgaagatgccagccaa
gagcaaggtacaagtctgggtacaaggtcaaaccaggaagtgcttccatcaatatcaaat
gacaggtcagaggagctaagtccaaaagcagctgctacggattccaacagcctgatctcc
tcaactgcaacttctgtgcgtttacaccagcctcttgttctgcctaagatgtctgcacct
gttgtcaatcttgttgacgaacagaaggatcagctgcataatttggctttcatacgcatc
attgaggcatacaagcaaatagcagttgctggaagttcacaatttcgcctttccttgctt
gcttctttaggagttgagtttccttcagagttagacccatgggaactccttaaaaagcac
atattgtcagattatgtggttcatgagggacacgagttgacattgcatgtcctctacagg
ttatttggtgaggtagaagaggaacatgacttcctttcttctacaaccgctgcttctgtg
tatgaaatgttccttctgactgtggctgaaatgcttagagattcttttcctccttcagac
aaatctttaagtagattgcttggtgaagctccttatcttccaaattcaattttcagtcta
ttagagtccttgtgttctcctggaaacatcgataaagctgaggagttgcaaagtggagat
cgagttactcaaggtctcagcactgtatggagcctgattttgctgaggcctcctattcga
gaatcctgcttaaaaattgctctgcagagtgcagttcatcatttggaagaagtgcgtatg
aaggcacttcgtctggtggcaaataagctttatcctctctcatccatcgctcaacagata
gaagatttcgcaaaggaaaagctgctttctgtggtaaatagtgatgctacagaaagcatg
gatgctgaagggtcattcactgaatcacagaaggattcgattttggaaaaaccatcaaat
gagcatcaatctatgagtgccatcagtaaagatatctcctctgagactcatcagtcatgc
acatctgaaagtgtatcgtcactctcaatctcagaggcccagcggtgcttgtcactgtat
tttgccctgtgcacaaagaagcactccctttttcgccaaatttttattgtttataaaagt
gcatcaaaggcagttaaacaggcagttaatcggcacattcctatactagtccgtactatg
ggttcgtcatctgatcttcttgaaataatttcagatcctcctattggaagcgagaatctt
ctgatgcaggttttacaaacactgacagaaggggcagttccttcacctgaattgttattc
accattaggaagttgtatgattcaaaaataaaggatgcagagatcctaattccaatatta
ccattcctacccagagatgagattttgctgatctttccccatttagtgaatcttcctctg
gataagttccaaattgcacttgctcgtacactacagggatcatctcattctggtacgatg
ctctctccagctgaagtattaattgccatccatggtattgatcctgacagggacggaatc
cccttgaagaaggttacagatgcttgcaatgcttgttttgagcaacgacagatattcact
cagcaagttcttgcgaaggtcttaaatcagttggttgagcaaattcctcttcctttatta
ttcatgcgcacggtactacaggctataggtgcttttccagcattggtggagtttattatg
gagatcctttctcgtctcgtaagcaagcagatatggaagtacccgaagttgtgggttggc
ttcctgaagtgtgcactattgacgaagcctcagtcattcaatgtgttacttcagcttcct
ccaccacaactggaaaatgcactgaacagaaccgcagcactgaaagctcctttggttgcc
tatgctagccaaccaaacattaaatcttcacttccaaggtctgttctggtggtcctggga
atagctccagaccctcagacttcaagtcaagcacagacaagtctggcacaaactggagat
acgaacaactcagataaggatgtgactgtagagaattcaaaaactggagaaacgagcaac
tcagttaaggaggtgctgacagagaaatctaaagaatcttctgttgctagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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