KEGG   Populus trichocarpa (black cottonwood): 7468792
Entry
7468792           CDS       T01077                                 
Name
(RefSeq) uncharacterized protein LOC7468792
  KO
K11338  RuvB-like protein 2 [EC:5.6.2.3]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    7468792
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pop03036]
    7468792
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:pop03037]
    7468792
Enzymes [BR:pop01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     7468792
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TIP60 complex
     7468792
  Chromatin remodeling factors
   SRCAP complex
    7468792
   INO80 complex
    7468792
   INO80 complex (yeast)
    7468792
   SWR1 complex
    7468792
   ASTRA complex
    7468792
Cilium and associated proteins [BR:pop03037]
 Motile cilia and associated proteins
  Dynein assembly factors
   7468792
SSDB
Motif
Pfam: TIP49 TIP49_C AAA DnaB_C RuvB_N AAA_22 AAA_19 AAA_5 AAA_16 Mg_chelatase ATPase Sigma54_activat AAA_25 nSTAND3 Zeta_toxin SLFN-g3_helicase AAA_17 YtkA AAA_7 CBFD_NFYB_HMF TsaE GvpD_P-loop AAA_11 bpMoxR AAA_18 Cytidylate_kin DEAD MS_channel_2nd NACHT
Other DBs
NCBI-GeneID: 7468792
NCBI-ProteinID: XP_002323491
UniProt: B9IFT1
Position
16:complement(9628646..9631530)
AA seq 467 aa
MADLKLSETRDLTRIERIGAHSHIRGLGLDSALEPRAVSEGMVGQTSARKAAGVILQMIK
EGRIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQSFR
KAIGIRIKEETEVIEGEVVEIQIDRPAVAGAASKTGKLTMKTTEMEGVYDLGAKMIESLG
KEKVQSGDVIAIDKPSGKVTKLGRSFTRSREYDAIGPQVRFVQCPDGELQKRKEIVHCVT
LHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHM
LDIECFSFLNRALENEMAPILVVATNRGITNIRGTNYKSPHGIPIDLLDRLLIITTQPYT
KDEIRKILDIRCQEEDVEMAEEAKALLTHIGVETSLRYAIHLITAAALACQKRKGKVVES
EDITRVYNLFLDVKRSTQYLMEYQEQYMFNEAPIGDGDEDGTNAMLH
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggcagacctcaaactctcagaaactcgagacctaacaagaatcgagcgcataggcgct
cactcccacatccgtggtctggggctggactcagccctcgaaccacgcgccgtttctgaa
ggaatggtgggacagacctcagcccgcaaagccgccggcgtcatcctccaaatgataaag
gaaggaagaatcgcgggtcgagccgttcttatcgcgggtcaacccggaaccggtaaaacc
gcaatcgccatgggcatggcaaaatccctaggtcttgaaaccccatttgcaatgatctcc
gctagcgagatattttctcttgaaatgtcgaaaaccgaggctttaatgcagtcttttagg
aaagcaattgggattaggattaaagaagaaactgaggtgattgaaggtgaagttgtggag
attcaaattgatagaccagcagtggctggtgctgcttcgaaaacagggaaattgacgatg
aagacaacggagatggaaggggtttatgacttgggagcaaagatgattgagagtttggga
aaggaaaaagtgcagagtggagatgttattgctattgataagccttctgggaaagttacc
aagcttggcaggtcttttacacggtcgagggaatatgatgccattgggccacaggttagg
tttgttcagtgtcctgatggggagttgcagaagaggaaagagattgtgcattgtgtcaca
cttcatgaaattgatgtcattaatagcagaacacagggatttctggctctcttcactggt
gatactggtgaaatccgtgcagaagtaagggaacaaattgacacaaaggtggcagaatgg
agagaggaaggcaaagcagagattgtgccaggtgttcttttcattgacgaggtgcacatg
cttgatattgaatgcttctctttcctgaatcgtgctcttgagaatgagatggctccaata
ctagttgttgccaccaatagagggattactaatatacgaggaacaaattataaatctcca
catgggattccaatagatctccttgatcgccttcttatcattactactcaaccttataca
aaggatgaaattcgcaagattctggacatcagatgccaagaagaagatgtagagatggct
gaagaagcaaaggctctgttgactcatattggggttgaaacttccttgagatatgctatc
catctaattactgccgctgcgttggcatgccagaaacgaaaaggaaaggttgtggagagt
gaggacattactcgagtctacaatctgtttctggatgtgaagagatcaacgcaatacttg
atggagtatcaggagcagtacatgtttaatgaagcacccataggagatggtgacgaagat
ggcaccaatgcaatgcttcattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (29)   
   Pfam (29)   
All databases (45)   

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