KEGG   Populus trichocarpa (black cottonwood): 7468975
Entry
7468975           CDS       T01077                                 
Name
(RefSeq) polygalacturonase
  KO
K01184  polygalacturonase [EC:3.2.1.15]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop00040  Pentose and glucuronate interconversions
pop01100  Metabolic pathways
Module
pop_M00081  Pectin degradation
Brite
KEGG Orthology (KO) [BR:pop00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00040 Pentose and glucuronate interconversions
    7468975
Enzymes [BR:pop01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.1  Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
    3.2.1.15  endo-polygalacturonase
     7468975
SSDB
Motif
Pfam: Glyco_hydro_28 Pectate_lyase_3 Beta_helix
Other DBs
NCBI-GeneID: 7468975
NCBI-ProteinID: XP_024443336
Position
16:3627040..3630403
AA seq 453 aa
MALQRALLYSFFIISISIISSYSCSQEDPLNNYLEEQASGYDSQAYPSYIEDGGFKDLIK
LRSDVLVLQTFSKEGSKSTPVITVGVRDFGVKDDGGDDTDDTETFERAWKEACSSPEGAI
IVVPEYTYRLKPIRFQGPCKSNIALQVHGTIEASCNQSDYKKDSRHWLLFDSVDNLLVEG
GGTIDGNGKIWWENSCKVNKSLPCKEAPTAVTFFECQNLIVKDLKIQNAQQMHVTFKKSN
HVLVSNLTVISPEESPNTDGIHITKTQNIQITDSVIGTGDDCISIVSGSHNVQATGITCG
PGHGISIGSLGAHDSKDHVSGVTVKGAKLSGTANGVRIKTWQGGSGNVSNIKFQNIEMNK
VTNPIIIDQNYCDQDKPCKQQKSALQVKNVMYKNIKGTSASEVAMRFDCSKAYPCQGILL
QDINLERAGDRTAKALCNNVKLATLGVVYPKCS
NT seq 1362 nt   +upstreamnt  +downstreamnt
atggccttacaaagggcacttctttactcattcttcataatctccatctccattatttct
tcctatagttgttcgcaagaggacccacttaataattaccttgaagaacaagcatctggc
tatgattctcaagcttatccttcgtatattgaagatggtgggtttaaggacttaattaag
ctacgaagtgatgttttagttttgcagacgtttagcaaagagggtagcaaatcaactcca
gttataacagttggtgtaagggactttggagttaaagatgatggaggagatgatacagat
gacacagagacatttgaaagggcttggaaggaagcttgttcttcccctgaaggtgctatt
attgttgtgcccgagtacacttatcgtcttaagccgattagattccagggtccttgcaaa
tctaatattgcattgcaggtacatggaaccattgaagcatcttgtaatcaatcggactac
aaaaaggatagtagacattggctactctttgatagtgttgacaatttactagttgaaggt
ggtggaactatcgatggaaatgggaagatatggtgggaaaactcgtgcaaagtcaataaa
tctcttccttgcaaagaggcacctacggctgtcaccttctttgaatgccagaatttgatt
gtgaaggacctcaaaatccaaaatgcacaacaaatgcatgttactttcaagaaaagcaat
catgttctagtatccaacctcacagtaatttcaccagaagagagccctaacaccgacggc
atccatatcacaaagactcaaaacatccagattactgattcagtcattggaacaggtgat
gattgtatatccattgtaagtggatcacataatgtgcaggctacgggcataacttgtgga
ccaggtcatggaatcagtattggaagcttaggagcacatgattcaaaagaccatgtttca
ggagttactgtcaagggtgccaagctttctggcaccgcaaatggtgttaggatcaaaaca
tggcagggagggtctgggaatgtaagcaacatcaagtttcagaatattgaaatgaacaag
gtcaccaaccccattataatagatcaaaactattgtgaccaggataaaccatgcaaacaa
cagaagtcagctcttcaagtgaaaaatgtgatgtacaagaacataaaggggactagcgct
tctgaagtggctatgagatttgattgcagcaaggcttatccatgtcaagggattctatta
caagatattaatcttgaaagagcaggagatagaacggccaaagctttgtgcaacaatgtt
aaattagctacgttgggagttgtttatccaaaatgttcttga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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