KEGG   Populus trichocarpa (black cottonwood): 7469168
Entry
7469168           CDS       T01077                                 
Name
(RefSeq) N-glycosylase/DNA lyase OGG1
  KO
K03660  N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    7469168
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pop03400]
    7469168
Enzymes [BR:pop01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     7469168
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     7469168
SSDB
Motif
Pfam: OGG_N HhH-GPD RecR_HhH HHH
Other DBs
NCBI-GeneID: 7469168
NCBI-ProteinID: XP_002307451
Position
5:complement(18682974..18691071)
AA seq 378 aa
MKRARPTPPPATPTTSRSSPIPPLPTPPQPRHSSKKHQKIIFKPTNWAPVNLTQSELSLP
LTFPTGQTFRWKQTGPLQYTGSLGRHLISLKHHQNGDVYYQIHHSPSQSAAKSALLSFLN
TNISLTEMWHGFAAADSRFAELAQHFKGARVLRQDPLECLIQFLCSSNNNISRITKMVDF
VSSLGDHLGNVEGFEFHAFPSLERLALVTEQQLREAGFGYRAKYVTGTVNALQSKPEGGV
KWLESLRKLQLQMVIDSLCTLPGIGLKVASCIALFSLDQHHAIPVDTHVWRIATTHLVPE
LAGASLTPKLCGRVADAFVTKYGKYAGWAQTLLFIAELPSQKALLPSVTVNEKKSSKKRG
SKAQRGPSSTEEGGQQAD
NT seq 1137 nt   +upstreamnt  +downstreamnt
atgaagcgagccagacccacgccgccacccgccacccccaccaccagcagatcatcacca
ataccacctctgccaacaccaccacaaccccgccactcctccaaaaaacaccaaaaaata
attttcaagccaacaaactgggccccagtcaacctgacccagtcagaactctcactccca
ctcacattccccaccggccaaaccttccgttggaaacaaaccggtcccctccaatacaca
ggcagtctcggtcgtcacttaatctcccttaagcaccatcaaaacggcgacgtttattac
caaatccaccattccccctcccaatccgctgccaaatcagctctcctcagtttcctcaac
accaacatctcactaaccgaaatgtggcacgggttcgccgccgctgattcgcggttcgct
gaattggcacagcattttaaaggagctagggttttgaggcaggatccacttgagtgcttg
attcaatttttatgctcttcgaataataacatttcgaggatcactaaaatggtggatttc
gtgtcctcattaggtgatcatttggggaatgttgagggttttgagttccacgcgtttcct
tccctggagagattggctttggttacggagcagcagctaagagaggctggttttggttat
agagctaaatacgttactggaacggtgaatgctttgcaatcgaaaccggaaggaggtgtg
aaatggcttgaatctcttcgaaaattacaactccaaatggtgattgattcactttgtaca
ttacctggaattggtttaaaagtggcatcctgtattgctctgttttctctcgatcaacat
catgccatccctgttgatacgcacgtgtggcggattgctacgacacaccttgtacctgag
cttgctggtgctagcctgacacctaagctctgcggccgtgtggcagatgcgtttgtgact
aagtatgggaaatatgctggatgggctcagacattacttttcattgctgaattgccctcg
cagaaggcccttctaccatcagtgactgtcaatgaaaagaaatcctctaagaaaagaggc
agcaaagcacaacgtggcccaagcagcactgaggaaggaggccagcaagcagattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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