KEGG   Populus trichocarpa (black cottonwood): 7469919
Entry
7469919           CDS       T01077                                 
Name
(RefSeq) ubiquitin C-terminal hydrolase 12 isoform X4
  KO
K11838  ubiquitin carboxyl-terminal hydrolase 7 [EC:3.4.19.12]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    7469919
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:pop01002]
    7469919
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    7469919
Enzymes [BR:pop01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     7469919
Peptidases and inhibitors [BR:pop01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   7469919
Ubiquitin system [BR:pop04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    7469919
SSDB
Motif
Pfam: USP7_ICP0_bdg USP7_C2 UCH MATH UCH_1 ubiquitin Malt_amylase_C
Other DBs
NCBI-GeneID: 7469919
NCBI-ProteinID: XP_002322753
UniProt: B9IIF3
Position
16:4482260..4493966
AA seq 1114 aa
MTMMTPSPLDQEDEEMLVPHSDLVEGPQPMEVAQVEQTSTVENQPVEDPPSMKFTWTIEN
FTRLNTKKHYSDIFIVGSYKWRVLIFPKGNNVDHLSMYLDVADSTALPYGWSRYAQFSLA
VVNQIHNKYSIRKDTQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVVIEAEVAVCK
VLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHISYFRKAVYHMPTTENDMPTGSIP
LALQSLFFKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVE
GTIQQLFEGHHMNYIECINVEYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDN
KYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDREN
GKYLSPESDRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWFKFDDERVTKEDVKR
ALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLR
IRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLKEQIGKDIYFDLVDHDKVRNFRIQKQ
TQFSLFKEEVAKELGIPVQFQRFWIWAKRQNHTYRPNRPLTPQEEAQSVGQLREVSNKTH
NAELKLFLEVELGLDLRPIAPPEKTKEDILLFIKLYDPEKQELRYVGRLFVKNSSKPIEI
LAKLNQMAGFASEEEIELYEEIKFEPCVMCEHLDKRASFRTSQIEDGDIICFQKSPPENE
GDCRNPDVPSYLEYVHNRQIVHFRSLEKAKEDDFCLELSKLHTYDDVVERVARQIGLDDP
SKIRLTSHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKNL
KVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFP
PNEKIENINDQYWTLRAEEIPEEEKNLGPQDRLIHVYHFTKESGQNQMQVQNFGEPFFLA
IHEGETLAEVKMRIQKKLQVPDEEFAKWKFAFLSLGRPEYLQDSDVVFTRFQRRDVYGAW
EQYLGLEHSDNTPKRSYAVNQNRHTFEKPVKIYN
NT seq 3345 nt   +upstreamnt  +downstreamnt
atgactatgatgactccttcaccgttagaccaagaagacgaggagatgctcgtaccgcat
tcagatttagttgaaggtcctcagccaatggaagtggcacaagtggagcaaactagtacc
gtggagaatcagcctgtggaggatcctccatcgatgaaatttacttggactattgagaat
tttactaggttgaacacgaagaagcattattctgatatatttattgttggcagttacaaa
tggagagtactgatattccctaaaggaaacaacgtggaccacctgtcgatgtatttggat
gttgcagattcgacagctttgccatatggatggagtagatatgcgcaattcagtttggct
gtggtcaatcaaattcataacaaatactcgattagaaaggacacacaacatcagttcaat
gcaagagagagtgactggggctttacatctttcatgcctctgagtgaactttatgatcct
agcagaggatacttagtgaatgatacagttgttattgaagctgaagttgctgtttgcaag
gttttagattattggtcctatgactcaaagaaggagacgggctatgtaggactgaaaaac
caaggagcaacatgttacatgaactctctcctacagactctataccatatttcctacttc
cgaaaggcggtgtaccacatgccaacaactgagaatgacatgcctacaggaagcattcca
ttggccctgcagagtttattctttaagcttcaatataatgataccagtgttgcaacaaag
gaactgaccaaatcttttggctgggatacgtatgattccttcatgcaacatgacgtgcaa
gagcttaacagggtcctgtgtgagaagctagaggataaaatgaaggggactgttgtggag
ggcactatacagcagttgtttgagggtcaccatatgaactacattgagtgcatcaatgtg
gaatacaaatctacaagaaaggagtcattttatgatcttcagcttgatgtgaaaggttgt
cgagatgtttatgcttcttttgacaaatatgtggaagttgaacgacttgagggtgataac
aaatatcatgccgaagaacatggtttgcaggatgcaaagaagggtgtcttatttatcgac
ttcccccctgttcttcaactccaattaaagcggtttgaatatgattttatgcgcgatact
atggtgaagattaatgatcgctatgaatttcctcttcaacttgacctggacagggagaat
gggaaatatttatcacctgaatctgacaggagtgtgcgaaatctatacacacttcacagt
gttttggttcacagtggaggtgtgcatggtggacattattatgcttttatcaggcctacc
ctctctgatcaatggttcaaatttgatgatgaacgcgtgacaaaggaagatgtgaagagg
gccttagaagaacagtatggtggtgaggaagagctacctcagaccaatcctggctttaac
aatactccatttaaattcacaaaatactcaaatgcatacatgcttgtgtatatacgggaa
agtgacaaggacaagataatttgtaatgttgatgagaaagacattgctgaacacttgagg
ataaggctgaagaaagaacaagaagaaaaggaagacaagagaagatataaagcacaagct
cacctttacacaattataaaggttgcgcgagatgaggaccttaaagagcaaattggaaag
gatatttattttgaccttgtggatcatgacaaagtccgtaacttccgtattcagaaacag
acgcagtttagtctgtttaaggaggaggttgctaaagagcttggtataccagtacaattt
cagagattttggatatgggcaaagcgccaaaaccacacatatagacccaatcggccattg
actccccaggaggaagcacaatcagttggacaactgagagaggtgtcaaataagacacat
aatgctgaattaaagttgttcttggaagttgagcttgggctggatttacgtcccattgct
ccacctgaaaaaactaaagaagatattctgcttttcatcaagctttatgaccctgaaaaa
caagaattacgatatgttggtaggctttttgtgaagaattctagtaaaccgatagaaatt
ctagcaaagcttaatcaaatggctggctttgcgtctgaggaagagattgaactttatgag
gaaatcaagtttgagccttgtgtcatgtgtgaacaccttgataagagagcctcatttcga
acaagtcagattgaagatggggacataatatgctttcagaaatctcctcctgaaaatgaa
ggagactgtcgaaatccagatgtgccttcatatttggaatatgtgcacaatcggcagata
gttcatttccgatctctagagaaggcaaaagaggatgatttttgtctagagttgtcaaaa
ttacacacttatgatgatgttgtcgaaagagtagctcgccagattggtttggacgatcca
tccaaaatcaggttaacatcccacaactgctactctcagcagcctaagccacagccaatt
aaatatcgaggagtggagcatctatcagatatgttagttcactacaatcagacttccgat
atcttgtattatgaagttctagatattcctcttccagagttgcaaggtctaaaaaatttg
aaagttgctttccatcacgctaccaaagatgaagtggtaattcataacattagattgcct
aaacaaagcaccgtgggggatgtaattaatgaacttaaaactaaggtagaattgtctcac
ccaaatgctgaacttcgactgcttgaagtattttatcacaagatttataagatctttcca
cccaatgaaaaaattgagaatataaatgaccagtattggacgctgcgggcagaggagatt
cccgaggaagaaaaaaatcttggtccccaagatcgcctgattcacgtttatcacttcacg
aaagagtctggacagaatcaaatgcaagtacagaattttggtgaaccctttttcttggcc
atccatgaaggtgaaaccttagccgaagttaaaatgcgtatacaaaagaagctgcaggtt
cctgatgaggagtttgctaagtggaaatttgcatttctgtcactgggtcgtccagagtac
ttgcaggattctgatgttgtgttcacccgctttcagagaagagatgtatatggtgcttgg
gagcagtaccttgggttggagcactccgataatactcctaaaaggtcttatgcagtaaat
cagaaccgtcacacatttgagaagcctgttaaaatatacaattag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (7)   
   Pfam (7)   
All databases (29)   

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