KEGG   Populus trichocarpa (black cottonwood): 7471196
Entry
7471196           CDS       T01077                                 
Name
(RefSeq) CLIP-associated protein isoform X1
  KO
K16578  CLIP-associating protein 1/2
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pop03036]
    7471196
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:pop04812]
    7471196
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    Microtubule-associated proteins
     7471196
Cytoskeleton proteins [BR:pop04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Cytoplasmic linker proteins (CLIPs)
     CLIP-associating proteins
      7471196
SSDB
Motif
Pfam: CLASP_N CEP104-like_TOG HEAT XMAP215_CLASP_TOG HEAT_EZ HEAT_2 Vac14_Fab1_bd Cnd1 PDS5 Adaptin_N Tti2 MMS19_C Maestro_HEAT UTP20_C RRP12_HEAT Sec7-like_HUS MMS19_N Dopey_N IFRD V-ATPase_H_N Npa1 SEN1_N
Other DBs
NCBI-GeneID: 7471196
NCBI-ProteinID: XP_024450000
Position
2:complement(24193550..24204921)
AA seq 1443 aa
MEEALELARAKDTKERMAGVERLHQLLEACRKSLSSSETTSLVDCCLDLLKDNNFKVSQG
ALQALASAAVLSGDYFKLHFNALVPAVVERLGDGKQPVRDAARRLLLTLMEVSSPTIIVE
RAGSFAWTHRSWRVREEFARTVTSAINLFASTELPLQRAILPPILQMLNDPNPGVREAAI
LCIEEMYSQAGPQFRDELHRHHLPNSMMKDINARLERIEPQVRPSDGLGGNFAPVEMKPT
SLHSKKSSPKAKSSTREISLFGAESDVTEKPIEPIKVYSEKELIREFEKIAATLVPEKDW
TIRIAAMQRVEGLVLGGATDYPCFRGLLKQFVGPLNTQLSDRRSSVVKQACHLLCFLSKD
LLGDFEACAEMFIPALFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRA
AVLRARCCEYALLILEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKT
WPERSRRLFMSFDPVIQRIVNEEDGGLHRRHASPSIRDRSAQTSFTPQASAASHVPGYGT
SAIVAMDRTSSLSSGTSLSSGLLLSQAKSLGKGTERSLESVLHASKQKVTAIESMLRGLE
LSDKQNPSALRSSSLDLGVDPPSSRDPPFPASVPASNHLTNSLTAESTASGIGKGSNRNG
GLVLSDIITQIQASKDSAKLSYRNNMAAESLPTFSSYSTKRISERGSVEEDNDIREPRRF
ANPHVDRQYMDTPYKDLNYRDSHSSHIPNFQRPLLRKHVAGRMSAGRRKSFDDSQLSLGE
VSSYVEGPASLSDALSEGLSPSSDWNARVAAFNYLHSLLQQGPKGVQEVIQNFEKVMKLF
FQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTL
EIVSKTYGVDILLPALLRSLDEQRSPKAKLAVIEFALSSFNKHAMNSEGSGNTGILKLWL
AKLTPLVHDKNTKLKEAAITCIISVYSHFDSIAVLNFILSLSVEEQNSLRRALKQYTPRI
EVDLMNFVQSKKERQRSKSSYDPSDVVGTSSEEGYIGASKKSHYFGRYSGGSVDSDGGRK
WSSTQESTLISGSIGQAAPDETQENLYQNFETSSNTDVYSSKNRDSNYVVGSTGLNLGSR
PGRLENMDNGLNFEGLLTPGMDINGLMSSEPLRAAEGYGHDNNVLSELDLNNHKPAAVKI
NSLADTGPSIPQILHLICNGNDESPTSSKRGALQQLIEASMANDPSVWSKYFNQILTAVL
EVLDDSDSSIRELTLSLIVEMLKNQKDAMEDSIEIAIEKLLHVTEDIVPKVSNEAEHCLT
VALSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMVQLPSFLPALFEA
FGNQSADVRKTVVFCLVDIYIMLGKAFLPHLEGLNSTQLRLVTIYANRISQARTGTAIDA
SHD
NT seq 4332 nt   +upstreamnt  +downstreamnt
atggaggaggcgctggaactggcgcgcgcgaaggacacgaaggagaggatggcaggagtc
gagaggctacaccaacttcttgaagcttgtagaaagagtttgagttcgtccgaaacgacg
tcgcttgtcgattgctgcttggatcttttgaaagacaacaatttcaaggtttctcaaggt
gctttacaggcgttggcttctgctgctgttttgtctggtgactactttaagttgcatttc
aatgcgcttgttcctgctgttgttgaacgcctaggtgacggtaaacagcccgttcgtgac
gccgctcgacgcctcttgctcactctcatggaggtttcttcgcctacaataattgttgag
agagctggctcatttgcctggacacacagaagctggagagttcgggaagagtttgctcga
acagtaacatctgcaattaatctttttgcatctactgagcttcctcttcagcgggctatt
ctacctcctattttgcagatgttgaatgacccgaatcctggtgttagggaagcagctata
ttatgcatcgaggagatgtactcacaggccgggccccaattccgtgacgagcttcatcgc
catcatcttcctaattccatgatgaaagatatcaatgccagactagagaggattgaacca
caagtacgcccttcagatggacttggcggtaactttgctcctgttgagatgaagcccaca
agccttcattccaagaaaagcagtccaaaagccaaaagttccacgagggagatatctctt
tttggagcggagagtgatgtcaccgagaaacccatagagccaattaaagtttactcagaa
aaggagctaattagggaatttgagaagattgcggctacccttgttcctgaaaaggattgg
actatccgcatagctgccatgcagagagttgaaggccttgttttgggaggtgctactgat
tacccatgttttcgggggcttctgaagcaatttgttggccctctaaacacacagttatct
gatcgaaggtctagcgttgtgaagcaggcttgccatctattatgctttttatcgaaggat
ctgttgggagattttgaggcatgtgccgagatgttcattcctgcccttttcaagctcgtt
gtgattactgtacttgtaattgcagaatctgcagataactgcataaaaacgatgttgcgt
aactgtaaagttgctcgtgtgcttcctcgcatagctgattgtgcaaagaatgaccgcgct
gcagtactccgtgcaagatgttgcgaatatgcactattgatacttgaacattggcccgat
gctcctgaaatacagcgatctgctgatctctatgaagatctgataagatgttgtgttgca
gacgcaatgagcgaggtgcgctcaactgcaaggatgtgctacagaatgtttgcaaaaact
tggccagagcgttcccgtcgtttatttatgtcctttgatcctgttattcaacggattgtt
aacgaagaggatggaggcttgcacaggagacatgcatctccttccatccgtgatagaagt
gctcaaacatcatttacccctcaggcatctgcggcttcacatgtacctggatatggaact
tcggctattgttgcaatggatagaacttcaagtttatcctctgggacatctctgtcttct
ggtcttttgctctcacaagcaaagtcccttggtaaaggtactgaacgtagtctggaaagt
gtgttgcacgctagtaagcagaaggtcactgcaattgaaagcatgcttagaggtttggaa
ttatccgacaaacaaaatccttcagctctccgttcatcaagtttggatctaggagttgac
cctccatcatctcgtgatccaccattccctgcatctgttcctgcctctaatcatctcaca
aactctttgacagcagaatcaactgcttctggtattggtaaaggcagtaaccgcaatggt
ggcttggtcttgtctgatattattacccaaattcaagcttccaaagattctgctaagcta
tcatatcggaataatatggcagccgagtctttgccaacattttcatcatattcaacaaag
aggatttctgaaagaggttcagttgaagaggacaatgacattagggaacctaggcgattt
gcgaacccacatgtagacaggcagtatatggacacgccttacaaagatttaaactacagg
gattcacatagcagtcacatccccaacttccagagaccacttttgagaaagcatgtggct
ggacgaatgtctgcgggcaggcgaaagagttttgatgatagtcaactctcacttggagag
gtgtcaagttatgtagaaggtccagcatctctcagcgacgcattgagcgagggacttagt
ccaagttctgactggaatgctagggttgctgctttcaattacctccattctttgctgcag
caaggcccaaaaggtgttcaagaagtaattcagaattttgagaaggtaatgaagttgttt
ttccagcatctggatgatccgcatcataaagttgcacaagcagctctctcgacacttgca
gatattattccatcttgccgaaagccatttgagagttacatggaacggatcttaccccat
gttttctcccgattaattgacccaaaggagctagtcaggcaaccttgctccacaactttg
gaaattgtcagcaaaacttatggggttgatattcttttaccagcattgctccgttcacta
gatgagcagaggtcaccaaaagccaaattggctgttattgagtttgccctcagttcattt
aacaagcatgcaatgaactctgaaggctctgggaatactggcattttgaagttatggctt
gctaagctgacaccgttagtacatgataaaaatactaagctcaaggaagctgctattact
tgcattatatcggtctattcacactttgattccatagctgtcctcaatttcattcttagt
ttatcggttgaagaacaaaattccttgcgacgagcccttaaacagtacactcctcgtatt
gaagtggacctaatgaactttgtgcagagcaagaaagagcgacagcgatctaagtcctct
tatgacccatctgatgttgttggaacatcatcagaagaaggatatattggtgcatcaaag
aagagtcactattttggaaggtattctggtggttctgttgatagtgatggcggcaggaag
tggagttctacccaagaatcaaccctgatatcgggaagtattggccaagcagctcctgat
gaaactcaggagaacttgtatcagaattttgagactagttctaatactgatgtctatagt
tcaaaaaatagggattcgaattatgtggttggttctaccggtctgaacttgggatcccgg
cctggccggctggaaaacatggacaatggccttaactttgaagggctgttgaccccaggt
atggacattaatggattgatgagttctgaacctctacgtgctgctgaaggctatgggcat
gacaataatgttctttctgagttggaccttaataatcataaacctgcagctgtgaagatt
aattctttggctgacactggtcctagcattcctcaaattcttcatctgatatgcaatggt
aatgatgaaagccctacctcaagcaagcgtggtgcacttcagcagttaattgaagcttct
atggctaacgatccctctgtttggtccaaatacttcaatcaaattttaacggctgtactg
gaggtgttggatgattctgattcatcaatccgagaacttactctttcattgattgtggaa
atgctaaaaaatcagaaagatgccatggaagattctattgagattgctattgagaagctg
cttcatgttacagaggatattgttccaaaagtttccaatgaagccgagcactgcttgact
gttgcattgtctcagtatgatccattcagatgcttaagtgtgattgtccctttattggtt
actgaagatgagaaaactcttgtaacctgcataaactgtttaactaagcttgtgggtcgt
ctttcacaagaggagctgatggtccagttaccatcatttttgcccgcgctttttgaagct
tttggaaaccagagtgctgatgttcgcaagactgtggttttctgtctggtggatatatat
atcatgcttggaaaagcatttttgccgcacttggaagggcttaacagtacacagctgcgt
ttggtgaccatttatgctaatcggatatcacaggcaagaacaggtactgcaatagatgct
agccatgattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (22)   
   Pfam (22)   
All databases (36)   

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