KEGG   Populus trichocarpa (black cottonwood): 7472336
Entry
7472336           CDS       T01077                                 
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU70 isoform X2
  KO
K10884  ATP-dependent DNA helicase 2 subunit 1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    7472336
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    7472336
   03400 DNA repair and recombination proteins [BR:pop03400]
    7472336
Spliceosome [BR:pop03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    7472336
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA-PK complex
     7472336
SSDB
Motif
Pfam: Ku_N Ku Ku_C SAP Myc-LZ
Other DBs
NCBI-GeneID: 7472336
NCBI-ProteinID: XP_024437442
Position
11:complement(13549052..13576396)
AA seq 627 aa
MELDPDDIFKDDEDDPDSEFYQQRESSKEFVVYLVDASPKMFSSTCPSEDGKEETHFHIA
ISCIAQSLKTQIINRSYDEVAICFFNTREKKNLQDLNGAFVFNVAEREYLDRPTARLIKD
FDCIEESFTKDIGSQYGIVSGSRENSLYNALWIAQALLRKGSAKTADKRILLFTNEDDPF
GSIKGVAKADMTRTTLQRAKDAQDLGISIELLPLSQPDEEFNVSLFYSDLIGLEGDELAQ
FMPSAGQKLQDMKDQLRKRMFTKRIVRRITLSIANGLSIELNTYALIRPTLPGAITWLDS
VSNRPLKTERSFICADTGALMQEPAKRYQPYKNDNIMLSVEELSEIKRVSTGHLHLLGFK
PLSCLKDYHNLRPSTFIFPSDKEVIGSTCIFIALLRSMVNLKRFAVAFYGSSSRPQLVAL
VAQDEIISAGGQVEPPGMHMIYLPYSDDVRHVEEIHSDTNAGAPRATDEQIKKAAALIKR
IDLKDFSVFQFANPGLQRHYAVLQALALDEDDMPEINDETLPDEEGMARPGVVKAVEEFK
LSVYGENYDEESDMGSGKASDASKKRKTAAENAAKESANYNWPDLADNGQLKDLTVTELR
YYLTAHNLPVTGKKEVLISRILTHLGK
NT seq 1884 nt   +upstreamnt  +downstreamnt
atggagttggaccctgatgacatctttaaagacgacgaagacgatcccgatagcgaattc
tatcagcaaagagaatcgtcgaaagaattcgtggtctaccttgtcgatgcttcccccaaa
atgttctcatctacttgcccttctgaggacggaaaggaagaaactcatttccacatagct
atcagttgtattgcgcagtcattgaagacccaaataattaatagatcgtatgatgaagtt
gcaatctgcttctttaacactagggagaagaagaatttgcaggatctaaatggtgctttt
gtattcaatgttgcggagagagagtatctagacaggccaactgcaaggcttatcaaagat
tttgattgcatagaggaatcattcacgaaagacattggcagtcagtatggtattgtgtct
gggtctcgggagaattccctttacaatgctctctggatagcgcaagcattgttgcgtaaa
ggatctgcgaaaacagctgataaacggattcttttatttacaaacgaagatgatcctttt
gggagcatcaagggtgtagccaaagcagatatgaccaggacaacattgcagcgagctaaa
gatgcacaagatcttggcatctcaattgaacttctccccttgagtcaacctgatgaggag
ttcaatgtttcacttttctattctgatttgattgggttggagggtgatgaacttgctcag
tttatgccttcagcaggacaaaaattgcaagatatgaaagatcagcttagaaaacgaatg
tttacaaagcgaatagtaagaagaatcacattgtcaattgcaaatggattgtcaattgag
ctgaatacatatgctttgattcgtccaactttgccaggggcaattacgtggcttgattct
gtcagcaatcgtcctttgaagaccgagagatcttttatctgtgccgatactggtgcattg
atgcaagaacctgcaaaacgatatcagccttacaaaaatgacaatatcatgttgtctgtc
gaggagctgtctgagataaaaagagtttcaacgggacatcttcatcttcttggattcaag
cccttaagttgcttgaaagattatcacaacttgaggccttcgacatttatttttcctagt
gacaaggaagtaattggtagcacttgcattttcattgccctgcttagatccatggtaaac
cttaaacgttttgcagttgcattttatggaagctcatctcgtcctcaattggttgccctt
gttgcacaagatgagattattagtgctggtggtcaggttgagccacctggaatgcacatg
atatatcttccctattctgatgatgtcaggcatgttgaagagattcattcagacacaaat
gctggggcacctcgagctactgatgaacaaattaaaaaggctgctgctttaataaaacgc
attgacttgaaagatttttctgtattccaatttgctaaccctggtttgcagagacactat
gcagttctgcaggccctagctctggatgaagatgacatgccagaaatcaatgatgaaaca
cttcctgatgaagaaggcatggccagaccaggagttgttaaagcagttgaagagttcaag
ctttctgtctatggagaaaattatgacgaggaaagtgacatgggcagtggaaaagcaagc
gacgcctccaaaaaacggaaaacagctgctgaaaatgcagctaaggagtctgcaaactac
aactggcctgatcttgctgacaacggacagttgaaggacttgacagtaacagagctgagg
tattacttgacagcgcacaatcttccagttacagggaagaaggaagttttgatcagcagg
atattaactcacttgggaaagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (5)   
   Pfam (5)   
All databases (24)   

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