KEGG   Populus trichocarpa (black cottonwood): 7474987
Entry
7474987           CDS       T01077                                 
Name
(RefSeq) serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform
  KO
K11584  serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    7474987
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pop01009]
    7474987
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7474987
   03036 Chromosome and associated proteins [BR:pop03036]
    7474987
Protein phosphatases and associated proteins [BR:pop01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-2 (PP2A)
    Regulatory subunits
     7474987
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Protein phosphatase 2A
     7474987
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Centromeric chromatin formation proteins
   Other centromeric chromatin formation proteins
    PP2A (protein phosphatase 2A)
     7474987
SSDB
Motif
Pfam: B56 PNK3P
Other DBs
NCBI-GeneID: 7474987
NCBI-ProteinID: XP_002312943
UniProt: B9HR26
Position
9:complement(11117853..11120025)
AA seq 464 aa
MGVLRNSPKASPIKKSATLQHLFDLEANNSNGTKIYSPKSSKQSITESEYGEILSIISHC
CSIFTFTDPLESPSEQDVKRLKLFQLLSFMKKPKKPLPEEIIRPLVSMLSANLFRPLPPS
AKRTVVCELPEDEDLVSTLSPAWPHLQVVYDILLRLVLSIDPKVLRGYVDERFLVNLLSV
FQTEDRRERDNLKNVYHRIYSKFTFYRAIMRKSMKDVFLHYVFESEKHSGIGELLEIWGS
IINGFTVPLKEEHKLFLMRVLIPLHKAKGMPVYHRQLAYCVNQFVQKEPMLGGTVVRGIL
KYWPATNCQKEVLLIDELEELVENIDPDHYRKLALLICTQISRCLNSLNSQVAERAIYVW
NNEQFVKMASSMMEEVFPVVVESVEKNLKWHWSKSVKQLTENVKTMIEEMDPNLYDKCLE
EIAHKEYLAGQEDIKRKENWERLELAAAKNHQFFQPQKCIYVSH
NT seq 1395 nt   +upstreamnt  +downstreamnt
atgggtgttctcagaaactcaccgaaagcttctccaataaaaaaatctgccacccttcaa
cacctctttgatttggaggccaacaatagcaatggcactaagatttacagtcccaaaagt
agtaagcagtctatcactgaatctgaatatggagagatcttgtctattatatctcactgt
tgctccatcttcactttcactgatcctttggagtctccctcagagcaagatgtcaagcga
ttaaagctcttccagcttctttctttcatgaagaaacccaaaaagcccctgcctgaagaa
attatacgcccgcttgtgtctatgctatcggcaaaccttttcaggcctctcccgccatct
gccaaacgaaccgtcgtctgtgaattacctgaggatgaagacctcgtttccactctctcg
cctgcttggccacacctgcaagtagtttacgacattctgcttcgactagtcctcagtatt
gatcccaaagttctccgtggttatgtcgatgaacgtttccttgtcaaccttctgtccgtc
tttcagaccgaagaccgaagagaacgcgataatctgaagaatgtttaccaccggatatat
tccaagttcaccttctacagggcaatcatgaggaaatctatgaaggatgttttcttgcac
tatgttttcgagtcagagaagcattctgggattggtgagctgctggagatatggggaagc
atcatcaatggttttactgtcccactgaaagaagagcacaagctgttcttgatgagagtg
cttattcctttgcacaaggccaaggggatgccagtttaccatagacagctggcttattgt
gttaatcaatttgtgcagaaggaaccaatgcttggtgggactgttgttagagggatctta
aagtattggcctgccacaaattgtcagaaagaagttctgctcattgatgaattggaggaa
ctggtggagaatatagatcctgatcactatagaaagttagctttgcttatatgtacccaa
atttcgaggtgcttgaacagtttgaactcacaggttgcagaacgtgcaatatacgtgtgg
aacaatgaacaatttgtgaagatggcatcatcaatgatggaagaggtgtttcctgtggta
gtagaaagcgtagaaaagaacctgaagtggcactggagcaagagtgtaaaacaactgaca
gaaaatgtgaagacaatgatagaagaaatggatccaaatttatatgacaagtgcctggaa
gaaatagcccacaaagagtacttagctggccaagaagatatcaagaggaaagaaaattgg
gaaaggttagaattggcagcagccaaaaatcatcagttcttccagccacaaaaatgcata
tatgtctcccattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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