KEGG T01077: 7476286

Populus trichocarpa (black cottonwood): 7476286

Entry

7476286           CDS       T01077

Name

(RefSeq) pentatricopeptide repeat-containing protein At5g21222 isoform X2

K17710

pentatricopeptide repeat domain-containing protein 1

Organism

pop Populus trichocarpa (black cottonwood)

Brite

KEGG Orthology (KO) [BR:pop00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pop03016]
    7476286
   03029 Mitochondrial biogenesis [BR:pop03029]
    7476286
Transfer RNA biogenesis [BR:pop03016]
Eukaryotic type
  3'processing and CCA adding factors
   3'processing factors
    7476286
Mitochondrial biogenesis [BR:pop03029]
Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    7476286

SSDB

Motif

Pfam:

PPR_2 PPR_1 PPR PPR_3 PPR_long ATP13 MRP-S27 TPR_10 Ferritin MNE1 GD_AH_second ERAP1_C

Other DBs

NCBI-GeneID:

7476286

NCBI-ProteinID:

XP_024446234

Position

18:9960937..9964989

AA seq 555 aa
MNVLIGKGKPREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGM
KPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALK
LLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYA
EKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLF
VFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDM
VKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGLHPNVVICTTVISGWCSAGKM
EHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVMEEKGVFPKKGTMQLI
ADAWRAIGLLSESERIIENDEDPEVNVDRKKDDVPVDRLESIYKDQNRGASYSKLLQMPG
EATTNQNGSSSVKIRTQMILKNYRSSSESSWTGTNSVLLTRLFVFGAQPQIKSRRQHQSL
VGICEKVASRILCIN

NT seq 1668 nt +upstreamnt +downstreamnt
atgaatgttttgattgggaaagggaagcctcgagaagcccattctattttcaacagttta
atggacgagggacacaagccaactcttataacatacacaacccttgtagcggccttgact
cggcaaaaactcttcaagtctatacttcgactcatctctaaagtggaagaaaatggcatg
aagcctgattctatactcttcaattccataatcaatgccttttctgaatctggaaatatg
aaggaagccatgaaactatttcggaaaatgaaggagagtggatgtaaaccaacaacaagc
acatttaacacccttatcaaaggatatgggaatgctggcaagactgaagaagctttgaaa
ttactggagtttttacaggatggaggtgtgaaaccaaatcaaaggacatataatattctt
gttagagcttggtgtaacaaggaaaacatggaagaagcttggaacatggtgtacaagatg
gtggcatctggcatgcaaccagatgctgtcacatacaacacactagcaagggcttatgca
gagaaaggagagacaattagggctgaagaaatgatactggaaatgctgaacaggagagtg
acacccaacgagcgtacttgcagcatcattgtgaatggctactgcaaagaaggtaatatg
gttgacgcttcaaggtttgtgttcagaatgaaggagcttggagtgcttcctaatctcttt
gtttttaattctctcatcaaaggatttctagataccatggatactgaaggagttgatgag
gtgctgacattaatggaagaaaatggggtaaggccagatgttgtaacatttagcacaatc
atgaatgcatggagttcagctgggcgtatggacaaatgcaaagagatcttcaatgacatg
gtgaaggctgaaatagaacctgacattcatgcgttcagtatccttgcaaagggttatgtg
cgagctggagaacctgaaaaggcagagtcaatcctgacttctatgagaaaatatggcttg
catccaaatgttgtaatctgcaccaccgttataagtggatggtgcagcgcaggaaaaatg
gagcatgcaatgaaggtttatgagaaaatgtgtgaaattggcgtttcccccaacttgaaa
acctatgagaccttgatatggggatatggtgaagcaaagcagccattgaaagcagaagaa
ctgctgcaagttatggaagagaagggtgtctttcctaagaaggggaccatgcagctcata
gcagatgcatggcgtgccattggtttgctgagtgaatctgagagaattatagaaaatgac
gaagatccggaggtcaatgtagatagaaagaaagatgatgtgcccgttgatagactggaa
agcatttataaggaccaaaaccgtggtgcttcttattctaagctgttacagatgcctggg
gaagctactaccaatcaaaatggatcatcttctgttaaaataagaacccagatgattctt
aagaattacaggtcttcgtctgagtcttcatggacaggtaccaactctgtcttgctcact
cgtctgtttgtgtttggggcacaaccgcaaatcaaaagcagaaggcagcaccaaagtctg
gtcggcatttgtgaaaaagtcgcaagcagaatcctgtgcataaattga

All links

Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (12)   
   Pfam (12)   
All databases (28)   

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