KEGG   Populus trichocarpa (black cottonwood): 7477049
Entry
7477049           CDS       T01077                                 
Name
(RefSeq) serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform isoform X1
  KO
K11584  serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    7477049
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pop01009]
    7477049
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7477049
   03036 Chromosome and associated proteins [BR:pop03036]
    7477049
Protein phosphatases and associated proteins [BR:pop01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-2 (PP2A)
    Regulatory subunits
     7477049
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Protein phosphatase 2A
     7477049
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Centromeric chromatin formation proteins
   Other centromeric chromatin formation proteins
    PP2A (protein phosphatase 2A)
     7477049
SSDB
Motif
Pfam: B56 AAA_33 VPS13_mid_rpt
Other DBs
NCBI-GeneID: 7477049
NCBI-ProteinID: XP_002314559
UniProt: B9HTC9
Position
10:complement(8566837..8573375)
AA seq 526 aa
MIKQILGRLPKKPSKSSENREFGGPSIAPSNTSSASKSTSDFQSNRLGTLNNSSPPGLDS
APHLGFSHGMKPTQAGNPKLNGSSVPPPYEALPTFRDVPNSEKQNLFIRKLNLCCVVFDF
ADPTKNLKEKDIKRQTLLELVDYITSANGKFTETVMQEVIKVVSVNLFRPRTPQTRENKV
LEAFDLEEEEPMMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYVDHSFVLKLLDLFDSE
DPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIING
FALPLKEEHKLFLVRALIPLHKPKCLPMYHQQLSYCITQFVEKDCKLADTVIRGLSKYWP
ITNSSKEVMFLSELEEVLEATQPAEFQRCMVPLFRQIARCLSSSHFQVAERALYLWNNDH
IENLIRQNRKVILPIIFPALEKNGRNHWNQVVQSLTVNVRKIFADIDPELFEECLRQFQE
NEAKAEEIKTKQEATWKRLEEIAATKATSSEAVLVPWAIPTLTSSG
NT seq 1581 nt   +upstreamnt  +downstreamnt
atgatcaaacaaatacttggtaggcttcccaagaagccttccaagtcatccgagaatcgt
gaatttgggggtccatctattgctccttcaaatacttcctcagcttctaaaagcaccagt
gatttccagagcaacagacttggaactttaaacaactcatctcctcctggtcttgattct
gctcctcatttaggttttagtcatggaatgaagcctacccaggctgggaatccaaagctg
aatggcagttcagtgcctccaccgtatgaagcattgcctacattcagggatgtcccgaat
tctgagaagcaaaacttgtttattagaaagctcaacttgtgctgtgtggtgtttgacttt
gctgaccccactaaaaatttgaaagagaaggatatcaagcgccagacgttgcttgagctc
gtggattatattacttctgcaaacgggaagttcacggaaactgtcatgcaagaagttata
aaggtggtatctgttaatttatttaggccgcgtactccacagacccgggagaataaggta
ttagaggcctttgatttggaagaggaggagcccatgatggacccagcatggcctcacttg
caaattgtgtatgaattctttcttagatttgttgcatcacctgagacagatgcaaagttg
gctaagaggtacgttgatcactcttttgttctcaagttgttagatctctttgattctgag
gatccaagggagagagagtatctgaagacaattctacatcgcatctatggaaagtttatg
gtgcatcgtccattcatcaggaaggctatcaataatatcttcttccgttttatttttgaa
acggagaagcataatgggattgctgagcttttagaggttttgggtagcataatcaatggg
tttgctttgccgctaaaagaagaacacaaattgttccttgttcgggcactgatccccctt
cacaagccaaagtgtttacctatgtaccatcagcaattatcatactgcattacacagttt
gtggagaaagactgcaagcttgctgacactgttataagaggtttatcaaagtactggcca
attactaatagttccaaggaggtcatgttcctaagtgagttggaggaagtcttagaagca
actcaaccagcagaattccaaagatgtatggtacccctgtttcgtcaaatagctcgttgc
ttgagcagttcacacttccaggtggcagaaagggctttgtacttgtggaacaatgatcat
attgagaacttaattagacagaaccgcaaagttatactccccattatctttcctgccctg
gagaaaaatggacgtaaccactggaatcaggtggtgcagagcttaacggttaatgttcgc
aagatctttgctgatattgaccctgagctgttcgaggagtgcttacgccagtttcaagaa
aatgaagcgaaggcagaggagatcaaaacaaaacaagaagcgacctggaagcgcttagaa
gagattgcagcaacaaaagccacgagtagtgaagcagtccttgttccctgggctataccc
accttaacatcttccggctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (3)   
   Pfam (3)   
All databases (24)   

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