KEGG   Populus trichocarpa (black cottonwood): 7482225
Entry
7482225           CDS       T01077                                 
Name
(RefSeq) chaperonin 60 subunit beta 4, chloroplastic
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    7482225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7482225
   03110 Chaperones and folding catalysts [BR:pop03110]
    7482225
   03029 Mitochondrial biogenesis [BR:pop03029]
    7482225
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pop04147]
    7482225
Enzymes [BR:pop01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     7482225
Messenger RNA biogenesis [BR:pop03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     7482225
Chaperones and folding catalysts [BR:pop03110]
 Heat shock proteins
  HSP60 / Chaperonin
   7482225
Mitochondrial biogenesis [BR:pop03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    7482225
Exosome [BR:pop04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   7482225
  Exosomal proteins of other body fluids (saliva and urine)
   7482225
  Exosomal proteins of breast cancer cells
   7482225
  Exosomal proteins of colorectal cancer cells
   7482225
  Exosomal proteins of bladder cancer cells
   7482225
SSDB
Motif
Pfam: Cpn60_TCP1 DD_K
Other DBs
NCBI-GeneID: 7482225
NCBI-ProteinID: XP_024465370
Position
10:complement(15050743..15056356)
AA seq 592 aa
MACSPSLISAISLTNPTRLKRVSSPSMLSPKAMAKEIYFNHDGSTTKKLLAGVEMVSELL
GVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNNLAGD
GSTTSVVLAHGLIAEGQKVIASGMNPVQIARGIVKTSEALVSELKLMSREVENDELADVA
AVSAGNDYTVGNMISDALQQVGRRGVVTIEKGRCTENILEIVEGMQFDRGYLSPYFVTDR
QRMVVEFHNCKLLLVDKKIQNAKEVFKILDNAVKEMYPIVIVAEDVDQEALAPIIRNKLK
GLLKGAAIKAPAFGERKSHYLDDIAILTGGTVIRDDMGLKLEKAGKEVLGTATKVVITKD
STLIVTDGSTREAVEKRVSQICSLVENTEEKFQKKILNERIARLSGGIAILQVGAQTQVE
LKDKLLRIEDALNATKAAIEEGVVVGGGCSLLRLSTKVDGIKELLDNEEQKIGAEIFKRA
LSYPARLIAKNAGVNGNVVINQVLSNADIRYGYNAATDTYEDLITAGIIDPTKVVRCCLE
HATSVAKTFLTSDAVVVDIKESDPLPMRKRMPPVAPPPMPKSPGVGPVGVYL
NT seq 1779 nt   +upstreamnt  +downstreamnt
atggcatgctctccatctctaatctctgcaatatctctcactaacccaacaaggctcaag
agggtctcctctccttctatgttaagcccgaaagccatggccaaggaaatttacttcaac
catgatggttcaaccacgaagaaacttctggcaggggtggagatggtgtcagagttatta
ggagtgactttaggaccgaaaggaaggaatgtggtgttgcaaaacaagtatggacctccc
aagattgttaatgatggagaaactgtcctcaaagagattgaactggaggatcccttggag
aatgttggagtaaaattggtgaggcaagctggtgcgaaaacaaataaccttgctggtgat
ggttcgacaacatctgtggttcttgctcatggtttaatcgctgagggtcaaaaggtgatt
gcatctggcatgaatcctgttcaaattgctcgtgggattgtgaaaacctcggaagctctt
gtatctgaactcaaattgatgtcgagggaggttgagaacgatgagcttgcagatgttgct
gcagttagcgcagggaatgattatacagtgggaaacatgatatccgatgcacttcaacaa
gtgggaagaaggggagtagtcacaattgagaaaggaaggtgtactgagaacatcctagaa
attgtagaaggaatgcaatttgatcgtggatatttgtctccttacttcgtaactgatcgg
caaagaatggtagtggagttccacaactgcaagctactcttggttgacaaaaaaatacag
aatgcaaaggaggtgttcaaaatattggataatgcagttaaagagatgtacccaattgta
atagttgcagaggatgtggaccaggaagctctggctccaatcattaggaacaaactcaag
ggtctattgaagggagctgctattaaagctcctgcctttggtgaacggaagagccactac
ttggatgacatcgctatcttgacaggaggcactgtaattagagatgatatggggctgaag
ctagaaaaggctgggaaggaggtgttgggcactgctactaaggtggtgataacaaaagat
tctacgttgatagtaactgatgggagcactcgagaagctgtggagaaaagggtttctcag
atatgtagtcttgttgagaacactgaagaaaaatttcaaaagaaaatattgaatgaaaga
atagcaaggttatctggagggattgctattctgcaggtaggagcacaaacacaagtcgag
ttgaaggacaaactgctgagaattgaggatgctttaaatgcaaccaaggcagcaattgag
gaaggtgtagtagtgggaggtggttgtagccttttgaggctatcaactaaggtggatggt
attaaagaacttttggataatgaagagcagaagattggagctgagatcttcaaaagagct
ttgagctatcctgcacgattaatagctaagaatgcaggtgtaaatggaaatgtcgtcata
aaccaggttttgtcaaatgctgatataagatatggatacaatgctgcaacagacacttac
gaggatttgataactgctggaattatagatcccacaaaggtggttagatgttgtttggag
catgcaacatcggtggccaagacattcctgacatccgatgctgtcgtagttgacatcaag
gaatcggatcccctcccaatgaggaaacgaatgccaccagtagcccctcctcctatgcca
aaatccccaggtgttggaccagttggcgtatacttgtag

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Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

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