KEGG   Populus trichocarpa (black cottonwood): 7483966
Entry
7483966           CDS       T01077                                 
Name
(RefSeq) chromatin-remodeling ATPase INO80
  KO
K11665  chromatin-remodeling ATPase INO80 [EC:5.6.2.-]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    7483966
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pop03036]
    7483966
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Chromatin remodeling factors
   INO80 complex
    7483966
   INO80 complex (yeast)
    7483966
SSDB
Motif
Pfam: SNF2-rel_dom DBINO Helicase_C ResIII DEAD HDA2-3
Other DBs
NCBI-GeneID: 7483966
NCBI-ProteinID: XP_024443170
Position
16:complement(2743801..2754325)
AA seq 1530 aa
MDNRRQAKDSLSYSNLFNLESLVNFRVPQPDDEFDYYGNSSQDESRGSQGGAMSKFVNGN
LSERELSSGKRKRRYNNSEGEEEDGYSGARITEEQYRSMLGEHIQKYKRRYKDSLSSPAP
PPRMGIPVPKSSLGGSKTRKLGSEQRGGLYDMETTSEWVNDIVPSKRGDYHEPEFTPKIY
YEPPYLDIGDGVTYRIPPSYDKLAASLNLPSFSDMRVEEFYLKGTLDLGSLAAMTANDKR
FGLRSRAGMGEPQLQYESLQGRLKALAASNSAEKFSLKISEEALNSSIPEGAAGNIKRSI
LSEGGVMQVYYVKVLEKGDTYEIIERSLPKKPKIIKDPSVIEREEMERIGKVWVNIVRRD
IPKHHRIFTTFHRKQLIDAKRFSENCQREVKLKVSRSLKIMKGAAIRTRKLARDMLLFWK
RVDKEMAEVRKKEEREAAEALKREQELREAKRQQQRLNFLIQQTELFSHFMSNKPNSQPS
EALPIADEKTDDQVMDCSTAEAGPDPEEDPEDAELRKEALKAAQDAVSKQKLLTSAFDSE
CSKLREVADIEGPITDASVAGSSNIDLQTPSTMPVTSTVKTPELFKGSLKEYQLKGLQWL
VNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLIVAPASVLNNWADEISRF
CPDLKTLPYWGGLQERMVLRKNINPKRLYRREAGFHILITSYQLLVSDEKYFRRVKWQYM
VLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQF
NEWFSKGIENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVVSELTRKTEVTVHCKLSS
RQQAFYQAIKNKISLAELFDSNRGHLNEKKIMNLMNIVIQLRKVCNHPELFERNEGITYF
YFGEIPNSFLPSPFGELEDIHYSGGRNPITYKIPKVVHNEIVQSSEVLCSAIGRGFGRES
FQKHFNIFSSENVYRSVFALDNSSDSLLIKSGTFGFSHLMDLSPAEVAFLAISSFMERLL
FFIMRWGRRFLDGILDLLMKDIENDHSNYLEKHKVRAVTRMLLMPSRSETDILRRKMATG
PADTPFEALVNSHQDRLLSNIKLLHSTYTFIPRTRAPPIGGQCSDRNFAYQMMEELHQPM
VKRLLTGFARTSTFNGPRKPEPLHPLIQEIDSELPVSQPALQLTYKIFGSCPPMQSFDPA
KLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIM
DRRDMVRDFQLRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG
QTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQDDLLAPEDVVSLLLDDAQL
EQKLREIPLQARDRQKKKPTKAIRVDAEGDATFEDLTETVAQGTGNEQSEDAEKLKSPNS
NKRKAASDKQITSKPRNSQKNEPNSSPMDYELDDPFPNSEPQSQRPKRLKRPKKSVNEKL
EPAFTATPSIDSSQIQYPPTNNLASTYSNT
NT seq 4593 nt   +upstreamnt  +downstreamnt
atggacaacaggagacaagccaaggactcgctttcttactccaatttgttcaatcttgag
tctttggtgaacttcagagttccacaaccagatgatgaatttgattattatgggaatagt
agtcaggatgagagcagaggtagccaaggtggagcaatgtcaaaatttgttaatgggaat
ctatcggagagggaattgagttcagggaagagaaagaggcggtataacaacagtgaggga
gaggaggaagacggatattcgggggcacgcattactgaggaacagtatcgatcaatgtta
ggagaacatatccagaagtacaaaaggaggtataaggattccttgtcaagtcctgcacct
cctcctcggatggggattcccgttccaaagagcagtttgggtggttctaaaactaggaag
ctgggaagtgagcagcgagggggtttatatgatatggaaaccacatctgaatgggtcaat
gacattgtaccatcaaaacgcggagactatcatgagccagagttcacgcccaaaatatac
tatgaacctccttatttggatattggggatggtgtcacttataggatacccccctcttat
gataagctggcggcatcattgaacttaccaagcttctcagatatgcgggtggaggaattt
tacttgaagggcaccttagatttgggttccttggcagcaatgacagccaatgataaaagg
tttggacttagaagccgagcgggaatgggagagccccagttacaatacgagtcacttcag
ggaaggttgaaggcattggcagcttctaactctgctgagaaattcagtctcaagatatcc
gaagaggcattgaattcctcaatcccagagggggcagctggaaatataaaacgctctatt
ttgtcagagggcggtgtaatgcaggtttactatgttaaagttttggagaaaggagacaca
tatgagattattgagcggagtctacctaagaagccaaaaataattaaagacccttctgtt
attgagagggaggaaatggaaaggattggtaaagtttgggtaaacattgtgagaagagat
atacctaagcatcataggattttcactacgtttcatcggaagcaactaattgatgcaaag
aggttctcagaaaactgtcaaagagaggtcaaattgaaggttagcagatcactcaaaata
atgaagggtgctgcaattcgcactaggaagttagctagagacatgctactgttttggaag
cgagtggataaggagatggcagaggtgaggaaaaaggaggaaagagaagctgcagaagct
ttgaagcgtgaacaagagctcagggaagcaaaaagacagcagcaaaggctcaattttctc
atacaacaaacagaactgttcagtcatttcatgtcaaacaaaccaaattcacagccgtca
gaagctttgccaattgcagatgaaaagacagatgatcaagtaatggattgtagcactgct
gaagctggacctgatcctgaagaagatcctgaggatgctgaattgagaaaagaggctctc
aaagctgctcaagatgcagtctccaagcagaaactgttaacaagtgcttttgatagtgag
tgttcaaagctgcgtgaagttgctgatattgagggacctataactgatgcctcagttgca
ggatctagcaacattgatttgcagacaccctccaccatgcctgttacatcaacagttaag
acaccagagttgtttaaaggcagccttaaagaatatcagttgaagggtcttcagtggctg
gttaattgttatgagcagggcttaaatggtatactggctgatgagatgggccttggaaag
accattcaagccatggcattcttggctcatttggctgaggaaaaaaatatctggggtcct
tttctgattgttgctcctgcttctgtcttgaataactgggctgatgaaatcagtcgtttc
tgccctgacttgaaaacccttccatattggggtgggcttcaagagcggatggtacttcgg
aaaaacattaatccaaaacgcctttatcgaagggaggctggttttcacattctcattacc
agctatcaattgctagtgtctgatgagaagtattttcggcgtgtgaaatggcaatatatg
gtactagatgaggcccaggctattaagagtgccaacagtataagatggaagacactgctc
agttttaattgtcgtaatcgcctactgctgactggtacaccaattcagaataacatggca
gaattgtgggccctcctacatttcatcatgcccacattatttgacagccacgaacagttc
aatgagtggttttctaaaggaattgagaatcatgcagaacatggaggtactttaaatgag
caccagctaaacagattgcatgcaattctgaagccttttatgctgcgacgtgtgaagaaa
gatgtggtttctgagttaactaggaaaacagaagttactgtacactgcaagttgagctct
cgacaacaagctttctatcaagctattaagaacaagatatctcttgctgagttgtttgat
agcaatcgtggacatcttaatgagaagaaaattatgaatctcatgaacatagtcattcag
ctgagaaaggtttgtaaccatccagagttgtttgaaaggaatgagggaatcacatatttc
tattttggagagattcctaattctttcctgccctctccttttggggagttggaggacata
cattattcaggaggtcgaaatcctattacgtataagattccaaaagtagtccacaatgag
attgtccaaagttctgaggtactttgctcagcaattgggcgtggttttggcagagagtca
tttcaaaagcattttaatatattctcatcagaaaatgtgtatcgatctgtatttgcactg
gacaatagctcagatagcttgcttattaagagtgggacgtttggtttttctcatttgatg
gatttatccccagcggaggttgcatttttggcaattagttcatttatggagaggctgttg
ttttttattatgagatggggccggcgatttttggatggaatcttggacttgctcatgaaa
gacatagaaaatgaccatagcaattaccttgaaaaacataaagttagagctgttacacgg
atgttattgatgccatcaagatctgagacagatatcctaaggaggaaaatggcaacaggc
cctgctgatactccatttgaagctctagttaattctcatcaggacaggcttctgtccaac
atcaaacttctccactcaacttacacgttcatcccacggaccagagcaccaccgatcggt
ggccaatgctcagatagaaactttgcctaccaaatgatggaagaattacaccaacccatg
gttaagaggttgttaactgggtttgcacgcacatccacatttaatggacctagaaagcca
gagcctcttcatcctttgattcaggagattgattctgaactacctgtttcacaacctgcc
cttcagttgacatacaagatttttggttcttgtccccccatgcagagctttgaccctgca
aagttgctcacggattctggaaagcttcaaacacttgatatattactgaaacgattgcga
gcagaaaaccaccgagttctattgtttgctcaaatgacaaaaatgctgaatattctcgag
gactacatgaattataggaaatatagatatcttagacttgatggatcttccaccattatg
gatcgtcgggacatggtcagagacttccagcttaggaatgatatttttgttttcttgcta
agtaccagagctggtgggttgggtattaatttgacagctgcagacactgttatcttttat
gaaagcgattggaatcctacactagatttacaggcaatggatagagcacatcggctgggc
cagacgaaggatgtcactgtctaccggctcatttgtaaagagacagttgaggaaaagatt
ttacaaagagcaagtcagaaaaatactgtgcagcagcttgttatgacaggtggtcatgtt
caggatgatctcttggctcctgaggatgtggtgtccttgcttctggatgatgcccagctg
gagcagaagttgagagaaattccactgcaggccagggatagacaaaagaaaaaaccaacg
aaggcaataagggtagatgctgaaggggatgcaactttcgaagatttgacagaaactgtt
gctcagggcacgggaaatgaacaatccgaggatgcagagaaattgaaatcacccaatagc
aataagaggaaagctgcttctgacaagcagattacatcaaagccaaggaattcacagaag
aatgaaccaaattcttcaccgatggactatgaactggatgatccttttccaaattctgag
ccacagtcacagagacccaagcggttgaagaggccaaagaagagtgtaaatgagaaactc
gaaccagcatttactgccacaccctcaatcgattcatcacagatccaatatccacctaca
aataatcttgcttcaacatattctaacacttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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