KEGG   Populus trichocarpa (black cottonwood): 7486662
Entry
7486662           CDS       T01077                                 
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03030  DNA replication
pop03410  Base excision repair
pop03420  Nucleotide excision repair
pop03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    7486662
   03410 Base excision repair
    7486662
   03420 Nucleotide excision repair
    7486662
   03430 Mismatch repair
    7486662
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pop03032]
    7486662
   03400 DNA repair and recombination proteins [BR:pop03400]
    7486662
DNA replication proteins [BR:pop03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    7486662
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     7486662
SSDB
Motif
Pfam: RFC1 BRCT AAA PTCB-BRCT Rad17 DNA_pol3_delta AAA_22 AAA_30 AAA_19 RuvB_N AAA_assoc_2 BRCT_2 nSTAND3 AAA_18 RNA_helicase Sigma54_activ_2 AAA_5 AAA_24 AAA_14 AAA_6 AAA_16 AAA_17 Gp44_lid Zeta_toxin NTPase_1 TsaE
Other DBs
NCBI-GeneID: 7486662
NCBI-ProteinID: XP_024441424
Position
1:complement(22091426..22102524)
AA seq 969 aa
MQRDIRKWFMKAHDKGNDNAATNAEKKPPPTEPKTETPVCGGQEGSGRRKNSKYFAANKQ
KQKEDKEIEDLPAKRKAQNDGVQSVKPPPSKKVHKVDDEEEDDDFSLPKKKNDASPSKKL
KSSSGRGIAQKPVHVNESDEDDVKDTESPLKSGGRGRGGRGVSGAPSGGRGRGGGRGGFM
NFGEKKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK
KTSYLLCDEDIEGRKSSKAKELGTPFLTEDGLFDKILSSKNSKAPAREDSKVSVEKVTSL
PKKSPQKADLKSSSLMSNATHKDLGAGSQQAKQKDQAIQRSSLIWTEKYRPKVPNEMIGN
PSLVTQLHNWLKNWNEQFHDTGNKGKGKKQNDSTAKKAVLLSGPPGIGKTTSAKLVSKML
GFQAIEVNASDNRGKADAKIFKGISGSNANCIKELISNEALGFEMDRSKHLKTVLIMDEV
DGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKR
LTQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVINYDDVRQRLQGSAKD
EDISPFTAVDKLFGFSGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSIGKDDNGMK
RMSLIARAAESIADGDIINVQIRRYRQWQLSQTGSLSSCIIPAALLHGSRETLEQGERNF
NRFGGWLGKNSTAGKNSRLLEDLHVHLLASRESNMGRETLRLDYLTVLLKQLTDPLRVLP
KDEAVEKVVEFMNVYSISQEDMDTIVELSKFQGHGNPLDGIPSTVKAALTRAYKEERKSR
MVRAADLVTLPGKKKAPKKRVAAILEPSDDGLREENGDAVAESEEENSSDTDDMEGTGNG
EKLQSELQSLNSKGIQVEVELKCRKESSKSKKTPTGRGKGGSASTEKKPAGRGRGGSGSS
EKPGAKRKR
NT seq 2910 nt   +upstreamnt  +downstreamnt
atgcaacgagatattcgaaaatggtttatgaaggcacacgataaaggcaatgacaatgct
gctaccaatgctgagaagaaacctcctccaactgagccgaagaccgaaacacctgtgtgt
ggaggacaagaaggttcaggaaggaggaaaaatagcaagtattttgcggcaaataaacag
aagcaaaaagaggataaagaaatagaggatcttcctgctaagaggaaagctcaaaatgat
ggtgtccaatctgtgaaacccccaccttctaaaaaggttcacaaagttgatgatgaagaa
gaagatgatgatttttccttgcccaagaagaagaatgatgcttctcctagtaagaaattg
aagagcagttcaggcaggggaattgctcagaaacctgtacatgttaacgaaagtgatgaa
gatgatgtgaaggatactgaatctcctctgaaatctggtggcagaggtcgtggtggtagg
ggtgtgtctggggcaccatctggtggaaggggcagaggtggtggacggggaggatttatg
aactttggtgagaagaaagatcctccacacaaaggagaaaaggaagtccctgaaggtgct
cctaattgtttagctggtttaacttttgtgattagtggaacgcttgacagtttggaaaga
gaagaggcagaagacttgattaaaaggcatggaggtcgtgttactggatctgtcagcaag
aaaacgagttatcttttatgtgatgaggatattgagggacggaaatcttcaaaagccaaa
gaacttggcacaccttttcttaccgaggatgggctgtttgataagatcctctcctcaaag
aattcaaaagccccggcacgagaagactcaaaggtgtctgtggagaaagtcacatctctg
ccaaagaaaagtcctcagaaagcagacttgaagagtagctctttgatgtcaaatgcaacc
cacaaagatttgggtgcaggttcccagcaagcaaagcagaaagatcaagctatacaacgc
tcatccctaatatggacagaaaaatataggccaaaggttccaaatgagatgataggaaat
ccatcactggttactcagctccataattggttgaagaactggaatgagcagttccatgac
actggaaacaagggaaagggcaaaaaacaaaacgattctaccgcaaaaaaagctgttcta
ttgagtggaccacctggaatagggaaaacaacatcagcaaagctggtctctaaaatgctc
ggtttccaggcaatcgaggtaaatgccagtgacaatcgtgggaaggcagatgccaagatt
tttaaaggaatcagtggaagcaatgcaaattgcataaaggaacttatcagcaatgaagct
ctgggttttgagatggataggtcaaagcatctgaaaacagttttgatcatggatgaggta
gatggaatgtctgctggggatagaggtggagttgctgatcttattgctagtataaagatt
tccaaaattcctatcatctgcatctgtaatgaccgttatagtcagaagctaaaaagtctt
gtgaactattgcttgcttctcagtttccggaagcctacaaaacaacagatggcaaagagg
ttaactcaagttgcaaatgcagaaggccttcaagttaatgagattgcacttgaggagctt
gcagaaagggtgaatggagatatgcgcatggcattaaaccaattacaatatatgagcctc
tcaatgtcagtcattaattatgatgatgtaagacagcgccttcaaggaagtgcaaaagat
gaagatatttcaccattcaccgctgtggataagctgtttggctttagtggaggaaagctg
agaatggatgagcggattgacctcagtatgagtgatcctgacttggtccctcttcttata
caggaaaactacattaattataggccaagttcaattggtaaagatgacaatgggatgaaa
cgtatgagcttgattgcacgtgctgctgagtctattgccgatggagatataataaatgtg
cagatccgaagatatcgacagtggcagctctctcaaactggttctctgtcatcctgtatc
attcctgctgcattgttgcatggatcaagggagacacttgaacagggtgaacggaatttt
aatagatttggtgggtggctgggaaagaattcaacagcgggcaaaaattcgaggcttttg
gaggatctgcatgttcatctccttgcttctcgtgaatctaatatggggagggagacactt
cgacttgactaccttacagttcttctgaaacaattgacagatcctcttcgggtgctgcct
aaggatgaagctgttgagaaggttgtggagttcatgaatgtatactcaataagtcaggag
gatatggataccattgtggagttatcaaaatttcaggggcatgggaatccattggacggc
ataccatcaactgtcaaagcggctctgacaagagcatataaagaagaaagaaaatcaagg
atggtacgagctgcagatttagtcacacttcctggaaagaagaaggcccctaagaagcgt
gttgcagctattctagaaccttctgatgatggtctaagagaggaaaatggtgacgcggtg
gctgaaagtgaagaagaaaactcatctgacacagatgatatggaaggaactggtaatggc
gagaagctgcagtctgagcttcagagtttaaattcaaaaggaatccaagtagaggtggaa
ctgaagtgcagaaaggaaagttcaaagtctaagaagacccctacaggaagaggaaaaggt
gggtctgcatctactgaaaaaaaaccagcgggcagagggcgaggtggttctggttcctcg
gagaaacctggagctaagagaaagagatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (26)   
   Pfam (26)   
All databases (42)   

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