KEGG   Populus trichocarpa (black cottonwood): 7489398
Entry
7489398           CDS       T01077                                 
Name
(RefSeq) DNA-directed RNA polymerase 1B, mitochondrial isoform X1
  KO
K10908  DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6]
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03029 Mitochondrial biogenesis [BR:pop03029]
    7489398
Enzymes [BR:pop01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     7489398
Mitochondrial biogenesis [BR:pop03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Mitochondrial RNA polymerase
    7489398
SSDB
Motif
Pfam: RNA_pol RPOL_N DUF6298 DUF3047
Other DBs
NCBI-GeneID: 7489398
NCBI-ProteinID: XP_002315996
Position
10:complement(15142461..15152089)
AA seq 988 aa
MWRTLAKYAPSKKLRLTSSSRNLFKESTVIEKFRCPDTKTCLNSTFSLLGSRQVGVLPQN
DKLDNPSYGDLTNSFRLSPCFFKGYATAAAAEVISSTDESDLSGSDDFQGSMEKIDKNFR
KLESQFMPQQKKMMAGMGIGKYTILKRRQVKMETEAWEQTAREYQEMLEDMCEQKLAPNL
PYVKSLFLGWFEPLRDAILAEQELCKVNSRVPHRAYFNDLPADMMAVITMHKLMGLLMTG
NGGTASIRVVQAASVVGEAIENEAKIHKFLEKTKKRKNLKEKISEGESVAAIYEGEKLTK
EQEKLRKKVTTLMKKQKVHQVRRIVKGHDDSMPWGQEAHLKVGSRLIQLMIETAYIQPPI
DQIGDGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPML
VPPLNWTGYDQGAYFFLPSYVMRIHGAKQQRVAIKRASRNQLEPVFKALDTLGNTKWRVN
KRILGVIDRIWASGGHLAGLVDREDVPLPEEPQTEDEAEIRKWRWKVKSVKKENSERHSQ
RCDVELKLAVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLG
KSGLRWLKIHLANLYAGGVDKLSYDGRISFTENHLDDIFDSADRPLEGQRWWLGAEDPFQ
CLAVCINLSEALRSPSPETAISHTPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGGKPA
DVYSGIAARVLDIMRRDAENDPAINPNSVHAKLLINQVDRKLVKQTVMTSVYGVTYIGAR
DQIKRRLKERCNIADDPQLYSAACYAAKTTLTALEEMFEGARGIMAWLGECAKVIASENQ
PVQWTTPFGLPVVQPYRQLGRQLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGS
HMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLESFQSS
FPNLKFPPLPERGDFDLRDVLQSTYFFN
NT seq 2967 nt   +upstreamnt  +downstreamnt
atgtggagaaccttagccaaatatgctccttctaaaaagctgagacttacctcaagctct
cgtaatctctttaaagaatcaaccgttattgaaaaattcagatgcccagataccaaaaca
tgcctaaattcaacattttctcttctgggttctcgtcaggttggcgttttacctcaaaat
gacaaattggacaatcctagttatggtgatttaacaaactcttttcgtctctccccttgt
ttcttcaaggggtatgcaaccgcagcagctgcagaggtgatttcttcgactgatgaatca
gacctttctgggtctgatgactttcaaggatcaatggagaaaattgacaagaatttccgg
aaactggagtcacagtttatgccacaacagaagaaaatgatggcaggtatggggattgga
aagtataccattcttaaaaggaggcaagtaaagatggagacagaagcatgggaacagacg
gcacgagagtatcaggagatgttagaggacatgtgcgagcagaaactggcacctaatttg
ccttatgtaaagtctctgtttcttggttggtttgagcctttgagggatgcaattcttgca
gagcaagaattgtgtaaggtgaactcgagggttcctcatagagcctattttaatgacttg
ccggctgatatgatggcggttattactatgcataagttgatggggttgttgatgaccggt
aatggagggactgccagtattagggtggttcaagccgcatccgttgttggcgaagcaatt
gaaaatgaggcgaagatacacaagtttttggagaagacaaagaagaggaagaatttgaaa
gaaaagatatctgaaggtgagtctgttgctgctatttatgaaggagagaaactaactaag
gaacaggagaaactgaggaaaaaagtaactacactgatgaaaaaacaaaaggttcatcaa
gtaaggcggattgtgaagggtcatgatgattcaatgccttggggtcaggaagcacatctg
aaggttggctctcgcttgattcaattaatgatagaaactgcctatatacaacctccaatt
gatcaaataggagatggtccgcctgatattcgccctgcatttgtgcatacccttaaaacc
atcacaaaagatacacagaaaagtagtaggagatacggtgttattgagtgtgatccactt
gttcgcaaaggccttgagaaatctgctaggcacatggtcatcccttatatgccaatgctg
gtgcctcctctaaactggacagggtatgaccaaggtgcatactttttcttaccatcctat
gttatgcgaatccatggagcaaaacaacaacgtgtcgcaattaaaagggcttcaaggaat
caattagagcctgtttttaaggccctggatactcttggaaataccaaatggagagtaaat
aaaaggattcttggagtcattgatagaatatgggctagtggaggccatcttgctggcttg
gttgaccgtgaagatgttcctttgcctgaggagccacaaacagaagatgaagctgaaatt
cggaaatggaggtggaaagttaaaagtgtgaaaaaggagaacagcgagcgacattcacag
cgttgtgatgtggaactaaaacttgcggtagctagaaagatgaaggatgaggaaggcttc
tactatccacacaatgttgattttcggggtcgtgcttaccctatgcacccatatttgaat
catcttggttctgatgtgtgccggggcatccttgagtttgcagaggggcgacctcttggg
aagtctggtttgcgctggctgaagatacatttagcaaatctgtatgctggtggtgtagac
aaattatcctatgatggtcgaatatcatttactgagaatcatctggatgatatctttgat
tctgctgaccgacctcttgaaggacaacgctggtggttgggtgcggaggatccttttcaa
tgcttggcagtatgcattaatctctcagaagctttgagaagcccttctccagagactgct
atttcacatacacctgttcaccaggatggttcgtgcaatggcttgcaacactatgctgcc
cttggaagggacaagttgggagcagctgcagtaaatctagttggaggaggaaaacctgct
gatgtttactcaggaattgcggccagagttcttgatatcatgcgaagagatgcagaaaat
gaccctgcaattaatccaaattcagtgcatgctaagcttttaatcaatcaggtggaccgg
aagttggtgaagcagacagtgatgacatcagtgtatggggttacttatattggtgcccgt
gaccaaatcaaaaggaggttaaaagagcgttgtaacattgctgatgatccacagctgtat
tctgcagcctgctatgcagcaaaaaccaccttgacagccttagaagagatgtttgaaggc
gcgagaggaattatggcttggcttggagaatgtgctaaggtgatagcttcagagaatcag
cctgtgcagtggaccactccttttggactccctgttgtacagccttaccgacagttggga
aggcaacttattaagacttcccttcaggtgctgacgctacaaagagaaaccgacaaggtc
atggtcaagcggcaaagaacagcctttcctccaaattttgtccactcccttgatggttct
cacatgatgatgactgctgttgcctgcaaagaggcaggtttgaactttgcaggggttcat
gattcatactggacacatgcatgcgatgttgatgaaatgaacaggattctgagagaaaag
tttgttgaactctacgagacaccaatactagagaatttattggaaagcttccaaagttcg
ttccccaacttgaaatttcctcccttgcctgagcgaggagactttgatctaagagatgtc
ctgcaatcaacctatttcttcaactag

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