KEGG   Populus trichocarpa (black cottonwood): 7495101
Entry
7495101           CDS       T01077                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RING1 isoform X1
  KO
K11982  E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27]
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pop04131]
    7495101
   04121 Ubiquitin system [BR:pop04121]
    7495101
Enzymes [BR:pop01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     7495101
Membrane trafficking [BR:pop04131]
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
   Rab associated proteins
    7495101
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    7495101
SSDB
Motif
Pfam: zf-RING_2 zinc_ribbon_9 zf-C3HC4_2 zf-RING_11 zf-RING_UBOX zf-C3HC4 zf-rbx1 zf-RING_5 zf-ANAPC11 zf-C3HC4_3 zf-Nse
Other DBs
NCBI-GeneID: 7495101
NCBI-ProteinID: XP_024450301
Position
2:complement(6125409..6127823)
AA seq 365 aa
MSLSPPRTRTNGTTGNFQPYWCYQCHQMVRIATTDPSEIICPRCSGQFLCEIGINRPILV
VDFTAFDPSPEARLLEALSLMLDPPIRRFNYSLDEPEPEPPRRSWFRRRNRPDFFDTEIR
PRRRRNLSLELDGRDNWDSLDPEIRPRRSRDWSLDGRGILEHEPGIQSRPRTWIQYRPRN
PLGEPIEPLSQSENPVRPLVDPRDFFVGSGLNELIEQLTQNDRQGPPPAPEIAIDTIPTV
KIEASHLVNDSHCPVCMEEFKVGGEARELPCKHIYHSECIVPWLRLHNSCPVCRKELPVN
SESSAQDEDECEDGGGRRGRCSRWRRQLSSLWPFRARYGRISPHGEVAGTSQGAVDSRWC
SCNIL
NT seq 1098 nt   +upstreamnt  +downstreamnt
atgtctttgagcccacccagaacaagaaccaatggcaccacaggaaacttccagccatac
tggtgctaccagtgccatcaaatggtcaggattgccaccacggacccatcagaaatcatc
tgccctcgttgttcagggcagttcctttgtgagattggaattaatagaccaatactggtt
gttgatttcactgcttttgatccttcaccagaagctcgcttacttgaagcactatctctc
atgcttgacccaccaatcagaagattcaattatagtctcgatgaacctgaacctgaacct
cctcgtcggtcctggtttcgtagacggaatcgacctgacttttttgatactgaaattcgt
cctcgaaggcgtagaaatctgtcgctagagcttgatgggagagataattgggattcattg
gaccctgaaatccgcccacggaggtctcgggattggagtcttgatgggagaggtattttg
gaacacgaacctgggatccaatccaggccaagaacatggatccaatacaggccaaggaat
cctcttggtgaaccaattgaacccctttcgcaatctgaaaacccagttcgtcccctggtt
gatcccagggacttttttgtggggtcaggcctaaacgagttgattgagcaattgacacaa
aatgaccgccaagggccaccaccagctccagaaatcgccattgataccataccaactgta
aaaatcgaggcaagtcatttggtgaatgactctcattgtccggtttgcatggaagagttt
aaagttggaggggaggcaagggagttgccttgtaagcacatataccacagtgaatgtatc
gtgccatggttaaggttacacaactcctgtccagtttgtcgaaaggagttgccggttaat
agtgaaagtagtgctcaagatgaagatgagtgtgaggatggagggggtaggaggggaagg
tgctcgaggtggaggaggcagttgtcatctttatggccatttcgcgctaggtatgggagg
attagtcctcacggagaggttgccggtacctctcaaggagcagttgattcacgatggtgt
tcttgcaatattctttag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (11)   
   Pfam (11)   
All databases (27)   

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