KEGG   Pseudomonas oryzihabitans: APT59_09210
Entry
APT59_09210       CDS       T04267                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
por  Pseudomonas oryzihabitans
Pathway
por03030  DNA replication
por03410  Base excision repair
por03420  Nucleotide excision repair
por03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:por00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    APT59_09210
   03410 Base excision repair
    APT59_09210
   03420 Nucleotide excision repair
    APT59_09210
   03430 Mismatch repair
    APT59_09210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:por03032]
    APT59_09210
   03400 DNA repair and recombination proteins [BR:por03400]
    APT59_09210
Enzymes [BR:por01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     APT59_09210
DNA replication proteins [BR:por03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     APT59_09210
DNA repair and recombination proteins [BR:por03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     APT59_09210
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     APT59_09210
   MMR (mismatch excision repair)
    DNA ligase
     APT59_09210
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      APT59_09210
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT
Other DBs
NCBI-ProteinID: ALZ84370
UniProt: A0A0U4WGL8
Position
2012188..2014569
AA seq 793 aa
MTDAQDAVTRIAALRSEIDAHNYRYYVLDEPSVPDAEYDRLFGELKALEAEHPELVTPDS
PTQRVSGSALAAFGTIRHEVPMLSLGNAFADENLQDFDRSVGKRLREEFGETDFAGPDSG
VEYTCEPKLDGLAVSLLYEEGVLTRGATRGDGTTGEDITANVRTIRNIPLRLQGEGWPAV
LEVRGEVFMSRTGFEALNARAMESGGKTFANPRNAAAGSLRQLDSRITAQRPLEFCAYGF
GRVEGGALPETQYDILQRLREWGIPISRELRKVQGAEGCRAYYQDIGQRRDALAYEIDGV
VYKVNRLDWQGELGFRAREPRWALAHKFPAREELTELLNVEFQVGRTGAITPVARLKPVQ
VAGVTVTNATLHNMDEIARLGVMIGDSVIVRRAGDVIPQIMQVVPERRPADARPVEIPTH
CPVCGSAVERTQLIKRGKGKESVSEGAVYRCVGRLACQAQLKQAIIHFASRRAMDIDGLG
DRIVEQLVDRDLVKSPADLYTLTYEQVVELEGFAELSSRNLLAAIEASRKPALARFIFAL
GIPEVGEETAKRLARALGSLQRIREALPEVLIYLPDIGPEVAFEIHNFFQSTHNRDVLEA
LLANGIELADEAEVHAEFSGYASFAEFLDQLHIPYLGKTGAKTLATAFPSLATLIEGSQD
WLSFKTLAGLNERAKQGLREYFAEADKVAKALAIEAQLKAFGMHWESTRQVVQGLPFAGQ
TWVLTGTLEAMSRDEAKERLEALGAKVSGSVSAKTAVVVAGPGAGSKLTKATELGVKVLD
EAAFLQILAAQGR
NT seq 2382 nt   +upstreamnt  +downstreamnt
atgaccgacgcccaagatgccgtcacccggatcgccgccctgcgcagcgagatcgacgcc
cacaactaccggtattacgtgctggatgagccgagcgtacccgatgccgagtacgaccgg
ttgttcggcgagctcaaggccctggaggccgagcatcccgaattggtgacgcccgactcg
cccacccagagggtcagtggttcggcgctggcggccttcggtaccatccgtcacgaggtg
cccatgctcagcctgggcaatgccttcgccgacgagaatctgcaggacttcgaccgcagc
gtcggcaagcgcctacgcgaggaattcggcgagaccgacttcgccggaccggattctggg
gtggaatatacctgtgaacccaagctcgacggcctggccgtcagtctgctgtacgaggag
ggcgtgctgacccggggcgctacccgtggcgatggcaccaccggcgaagacatcaccgcc
aatgtccgcaccatccgcaatattccgctgcgcttgcagggcgaaggctggccggcggtg
ctggaggtgcgcggcgaagtattcatgtcccgcactggcttcgaggcactcaacgcccgg
gccatggagagtggcggtaagaccttcgccaatccgcgtaacgccgcggccggtagtctg
cgccagctggattcgcgcatcaccgcccagcgtccgctggagttctgcgcctatggcttt
ggtcgcgtcgaaggcggggcgctgccggagactcagtacgacatcctgcagcggctccgg
gaatggggtattcccatcagtcgggagctgcgcaaggtgcagggcgccgagggctgtcgt
gcctactatcaggacatcggccagcggcgggatgccctggcctacgagatcgacggtgtg
gtctacaaggtcaaccgtctcgactggcagggtgagctaggttttcgcgcgcgcgagccg
cgctgggcgctggcgcacaagtttcccgctcgcgaagagctgaccgagctgctcaatgtc
gaattccaggtagggcgcaccggggccatcaccccggtcgcccgtctcaagccggtacag
gtggcgggcgtcaccgtgaccaacgccaccctgcacaacatggatgagatcgcccgcctg
ggggtgatgatcggcgatagcgtgatcgtgcgccgcgccggggacgtcatcccgcagatc
atgcaggtggtaccggagcggcggccagcggatgcccggccggtggagatccccacccat
tgcccagtatgcggttctgcggtggagcgcacccagctgatcaagcgcggcaaaggcaag
gagtcggtgagcgagggcgcggtctatcgctgtgtggggcgtctggcctgccaggcccag
ctcaagcaggcgatcattcatttcgcctcgcggcgggccatggacatcgatggcctgggc
gatcgcatcgtcgagcaactggtagaccgggacctggtgaagtcgccggccgacctgtac
accctgacctacgagcaggtcgtcgagctcgaaggcttcgccgagctttccagtcgcaac
ctattagccgccatcgaagccagtcgcaagccggcgctggcccgcttcatcttcgccctg
gggattcccgaggtgggtgaggagacggccaaacgcctggcgcgcgccctgggcagtctg
cagcgcattcgcgaggcgctgcccgaggtgctgatctatctgcccgatatcgggcctgaa
gtggccttcgagatccacaacttcttccagtccacgcacaaccgtgacgtgctggaagcg
ctgctggccaatggtatcgagctggccgacgaggctgaggtccacgccgagttctccggc
tatgccagcttcgccgaattcctcgaccaattgcatattccctatctgggcaagaccggc
gccaagaccctcgccacggcctttcccagcctggccacgctgatcgagggctcccaggac
tggctgagcttcaagacgctcgcgggactcaacgagcgggccaagcagggactgcgcgaa
tacttcgccgaggcggacaaggtagccaaggcactggccatcgaggcacagctcaaggcc
ttcggcatgcactgggagagcacgcgccaggttgtgcagggattgcccttcgccggtcag
acctgggtgctcaccgggacgctggaggccatgagtcgcgatgaagccaaggagcgcctg
gaagccctgggggccaaggtctcgggttcggtgtcggccaagaccgccgtggtggtcgcc
ggcccgggggcgggctccaaactgaccaaggccacggagctcggggtgaaggtattggat
gaggcggccttcctgcagatcctcgccgcccagggccggtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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