KEGG   Komagataella phaffii: PAS_chr1-4_0585
Entry
PAS_chr1-4_0585   CDS       T01092                                 
Name
(RefSeq) Ubiquitin-specific protease that interacts with Bre5p
  KO
K11841  ubiquitin carboxyl-terminal hydrolase 10 [EC:3.4.19.12]
Organism
ppa  Komagataella phaffii
Pathway
ppa04139  Mitophagy - yeast
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04139 Mitophagy - yeast
    PAS_chr1-4_0585
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:ppa01002]
    PAS_chr1-4_0585
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ppa04121]
    PAS_chr1-4_0585
Enzymes [BR:ppa01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     PAS_chr1-4_0585
Peptidases and inhibitors [BR:ppa01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   PAS_chr1-4_0585
Ubiquitin system [BR:ppa04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    PAS_chr1-4_0585
SSDB
Motif
Pfam: UCH UCH_1 GA
Other DBs
NCBI-GeneID: 8197715
NCBI-ProteinID: XP_002490722
UniProt: C4QYW8
Position
1:2496675..2498450
AA seq 591 aa
MTTGTQSSPQLTSDDLHKIDEYFRRHLKLQIAADNDSEHDQLPFFVGVTRQDFHHLKQLS
LRNRRLHSDPTYTLKVQRELSSIKKVEDKPAAYKTWASLLVKPSTNYHQNKLTKQDSPSN
HIKQSTSLPASSSQLSPQFQPLGAVLLRYMYDKDYQKPPDVKLLPHGLINRGNICYMNSV
LQLFIFCKPLFRVLRCIREKTIAHVSGTSDTPILDALTLLLERFQHKESHESASVDDFGE
PLSQESFYTSIISLPKFSHLRWGQQEDAEEFMGYVLDELHEEFISQMTKLTDTEKSQLLA
SVNNVESKKQISEALNLIQKKPGSSPKSKYDTEDKHDDDGWCEVGSNNKLSAKRTVEVKP
SPITEIFGGQFRSVLNVPRQKNGRSITLDPFLHVQLDISEPNVSSVEDAFTYLSQIEVIP
YKSSNGNLVQATKQNMIDKLPEVLIIHLKRFSYVRQESSSDVGTPVPQSSSPSPSPSPSG
STQNGFHSKNNDAEMGCIQKIQKIIKFGHALTIPEACLSRGETNNEYQLQGVIYHHGNST
EGGHYTIDVKNDRDSWLRIDDTNIVPLTPQQVVGASTNDGKDAYILVYQKK
NT seq 1776 nt   +upstreamnt  +downstreamnt
atgaccactggtacccagtcatcacctcaactgaccagtgatgatcttcacaaaattgat
gagtattttcgacgacatttgaaactccaaatagcggctgacaatgactcggaacatgat
caactgcctttttttgttggagtcacaagacaggatttccaccatcttaaacagctgtca
ctgaggaacagacggcttcactctgaccctacatatacattgaaagtacaaagagaacta
tcctccattaaaaaagtcgaagacaagcctgcagcatacaagacgtgggcttcgttgttg
gtaaaaccctccacgaattatcaccagaataaattaaccaaacaggactcaccctctaac
cacattaaacagtcaacctcattgccagcttcgtcatctcaattgtcccctcaattccaa
cctctaggtgctgtgctactaagatacatgtacgacaaggattaccaaaaacctcctgat
gtaaaacttcttcctcatggcctaataaacaggggtaacatctgctacatgaactcggtt
ctacaattgttcatcttttgcaagccactgttccgtgtgctccgttgcatacgagaaaag
acgatagctcatgtttctggtacgtctgacacacctattttggatgcattgactctgttg
ttggaacgatttcaacacaaagagtcacacgagtcagcatctgtggatgatttcggggaa
ccactatcacaagagtcattttacacatctataatatcactgcccaagttctctcattta
cgatgggggcaacaggaagatgctgaagagttcatgggttatgtattggacgaattgcac
gaagagttcatttcccagatgaccaaactcacagacactgaaaagagtcagcttcttgcc
agcgtgaataacgttgagagtaagaaacagatctctgaggcgttgaatctgatccaaaaa
aagccaggctcgtctccaaaaagcaaatatgataccgaggataagcacgacgatgacggg
tggtgcgaggttggatccaacaataaattatctgccaagcgtacagttgaagtgaaaccg
tccccgatcaccgagatattcggaggacaatttaggtcagtgctgaacgttcctagacag
aaaaacggcagatccataacgttagacccatttttgcatgttcagttggatatctctgaa
cccaatgtttcttctgtggaagatgcattcacatatctgtctcagatcgaggttataccc
tacaaatcaagcaacggcaatctggtccaagctacgaagcaaaatatgatcgataaatta
ccagaggtgctaattattcatctgaaaaggttttcctacgtgagacaggagagttcatcc
gacgtaggcactccagttccacagtcaagttcaccatctccatcaccttctccatctggc
tccacccagaacggatttcacagcaaaaacaacgatgctgagatgggatgtattcagaag
attcagaagataataaagtttggccatgcactgaccattccagaggcttgcttgtctcgt
ggcgagactaacaacgagtaccagctccagggtgtgatataccaccacgggaacagcaca
gagggaggacactacacgattgacgtcaagaacgaccgtgattcatggcttcgcatagac
gacacgaacatagtcccactcactccacagcaggtcgtaggcgcttctaccaacgacggg
aaggatgcgtatatactagtctaccaaaagaaatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (50)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (63)   

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