KEGG   Komagataella phaffii: PAS_chr2-1_0030
Entry
PAS_chr2-1_0030   CDS       T01092                                 
Name
(RefSeq) Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis
  KO
K14811  ATP-dependent RNA helicase DBP3 [EC:5.6.2.7]
Organism
ppa  Komagataella phaffii
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ppa03009]
    PAS_chr2-1_0030
Enzymes [BR:ppa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PAS_chr2-1_0030
Ribosome biogenesis [BR:ppa03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    PAS_chr2-1_0030
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Terminase_6N AAA_22 CMS1 Tim54
Other DBs
NCBI-GeneID: 8198149
NCBI-ProteinID: XP_002490910
UniProt: C4QZF6
Position
2:complement(57904..59400)
AA seq 498 aa
MGSELKASHGEKIKKEKKEKKEKKVKKDKKVKKEKKEKREKKDKKEKKEKKEKDHNETPQ
PATEVDQATIDAYLKENEISIDDPHNAEVSPILNFSMLQGIEEKIKNKISQFDKPTTIQA
VSWPYLLKGNDVIGVAETGSGKTFAFGVPAISHVLQKNSKGLQVLVISPTRELAVQIYDN
LKQLTDLCGLECCCIYGGVSKDDQRRQVKQSQCVIATPGRLLDLMEEGSIDLTGINYLVL
DEADRMLEKGFEEAIKSIMANVNTDRQTLMFTATWPKEVRELASHFMKSPVKVTVGDRDE
LSANKKITQIVEVIDPYDKEKKLLQLLSKYSKNDDKILIFALYKKEATRVERTLNYKGYK
VSAIHGDLSQQQRTQSLNDFKTGKSSLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVH
RIGRTGRAGKTGIAHTLFTEHEKHLSGALQNILRGANQPVPEELLKFGGHTKRKEHSVYG
AFFKDVDMNQKAKKIKFD
NT seq 1497 nt   +upstreamnt  +downstreamnt
atgggatccgaattaaaggcatcacacggagagaagataaagaaggagaagaaggagaaa
aaggagaagaaggtgaagaaggataagaaggtgaagaaagaaaagaaggaaaagagggaa
aagaaagacaagaaagaaaaaaaagagaagaaagaaaaggatcacaatgaaactcctcag
ccagctactgaagtagaccaggccaccatagacgcttacctcaaggaaaacgaaatttct
attgatgatcctcataatgctgaagtatcgccaatcttgaatttttccatgttgcaaggc
atagaagagaagatcaagaacaagatttcacagttcgacaagccaactaccatccaagcc
gtttcttggccatatttgttgaaaggaaacgatgtgattggtgttgctgaaactgggtct
ggtaagacgtttgctttcggtgttccagctattagccatgttctacaaaagaattccaag
ggacttcaagtcttggtaatctctcccactagagaattggcagtacaaatctacgacaac
ttgaaacaattaacagatttgtgtggacttgaatgctgttgtatttatggtggcgtctcc
aaagatgatcaaaggagacaagtcaagcaatcacagtgtgtaattgctaccccagggaga
ttgcttgatttgatggaggagggatctattgatctgacgggaatcaactatttggttttg
gacgaagccgaccgtatgctagagaaaggatttgaagaagcgatcaaatcaatcatggct
aatgttaatacagacagacagacgctgatgttcacggccacttggccaaaggaggtgcgt
gagttagcaagtcatttcatgaaatctccagttaaggtcaccgtcggggacagagacgag
ttatcagccaataagaaaattacacaaattgttgaagtcatcgacccttacgacaaagaa
aagaaactacttcaattgttgtctaagtacagtaaaaatgacgacaagattctaatattc
gccttatacaagaaggaggccacacgagtggagagaactttaaactataaaggatacaag
gtatctgcgattcatggagacctttcacaacagcaaaggacccagtctttgaatgatttc
aagactggcaagtccagcctcttgttggctactgacgttgctgccagaggacttgacata
cccaacgtcaaggttgtcatcaacttgacattcccactaacggttgaagattatgtccat
agaataggtagaaccggtagagctggtaagaccggaattgctcacacccttttcactgaa
cacgaaaaacatttaagtggagctttacaaaatattcttaggggtgccaaccaaccagtt
cctgaagagctgctgaagtttgggggccacaccaagaggaaggaacacagtgtttatggt
gctttctttaaggacgttgatatgaaccaaaaggctaagaagatcaagtttgactag

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (52)   

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