KEGG   Komagataella phaffii: PAS_chr2-2_0436
Entry
PAS_chr2-2_0436   CDS       T01092                                 
Name
(RefSeq) Involved in exosome mediated 3' to 5' mRNA degradation & translation inhibition of non-poly(A) mRNAs
  KO
K12600  superkiller protein 3
Organism
ppa  Komagataella phaffii
Pathway
ppa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PAS_chr2-2_0436
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppa03019]
    PAS_chr2-2_0436
Messenger RNA biogenesis [BR:ppa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     PAS_chr2-2_0436
SSDB
Motif
Pfam: TPR_19 TPR_8 TPR_14 TPR_2 TPR_22 TPR_16 TPR_1 TPR_17 ANAPC3 TPR_9 TPR_11 DUF6400
Other DBs
NCBI-GeneID: 8199139
NCBI-ProteinID: XP_002491753
UniProt: C4R1U9
Position
2:complement(1568863..1573071)
AA seq 1402 aa
MSVKKHLKAAKNALVSNDPDSCIEYAEEVLNLEQDNYFANIFLGKAYHLRSDALNATKYY
KTCCEIDPMNELGWKGLLLLARESDDYESFLSILKGYAEIKTKKNESLQEIAKEVEIYLK
KFEKNQDLCIAVLDSTTSFGFLGRLVGNPIIPEERSLILIIDKLKHKEEGVIATNIKRAK
IKTANNIPLEIQNKLNSIKWAVYSKSMLPDYMSRLLEICEDDDLQKKYNHLWLSYQLDVL
SCAPNGDAKTGLQRRIFVACEGIVAVKRDVRLAWDIYLNWLDPQNVDDLPLWLLCDYIRL
FGMEGLGSILYGFVYSDYSNYSEDKVRKYLTTEETYSEENSEGKRAVHFVDVQNDEELLN
QFKSDLTVSTALNDAELMSFYVKSIEKASTSLLACRIVSEFYLSLKEYKFGLMYCRKGIN
LLTKVLKDYGLSLPHTKESLLLDLASIYTYYDAPKDHPRAFKLYESILQKNPSNPKAKIG
KSLIFLQLGEFNKAKELLQTIFDANLEAKAYLGWCEINLGNLEFGRNLLTSCLKDTSLQD
EEMKVEIQWRLAHSYLQEVQEVKNLHDRYLVEGNIREAYSNLVVCLKQDATYAPAYTTLG
IVYEDYLNDSKRANKCYYKAFELDIRQLESARRLVVNFALEPDWESVRVLAQRVVDSDTS
RSILEGAVDPAWPYRSLGCALLEVQEDVKAIACFQSALRLDSKDTESWVGLGQAYLSGGR
LEASIKVFNHILNNLDSNWFTSYMLALSLSYGGQFAEGMSILQKLHSTRPKEKCILTALI
ESFLTKSQDDLSRGFVGRCIEASIISLDFVFQLSEVDIHCYKSWKYLSEAILIFTKVKNS
LPSYYVNKISAISKRVAISRSDLCEMGDGLEYRKGLLVEAESATHFDRAISYMVQSAKTA
IQVLSQKSSNKLRASLYYNLGLIYYHAFTLTNKLLYLKCSIKPLQRAILIEPLVADYWIA
LGNCTILKNARVAQHCYIKASSISSINHSVFVNLGALYLIAGDTDLAKISFHRALSMQPN
EYLAWEGLALSRNERTPDATSTFSLFAHAMVLSNGKSPLAQLLYGFQVLKKFAMQNKFYG
HTITERQEISLACGLMLRYLKLDSENEFALFVTLSLIELTQKFELGVELAKNLFSSLERT
YRERGSVSVLYQLTAAKSQQARLYLGSGQYGNAIMAAKMAMDMSEDDVLPRNSHVLKCVL
SSRSVIALSYFFNGQLSKALSQLKVCLENSDSYRLVILLAQILHTFGNQDAKTVAMEELF
NHIEKRDSSLPITLTMGAIAISEDLEDLLPVVNEDLKSLSFDQLAADSSRNVPQMVHLIN
RKLDIKENVWQKVAFLFPNDGKTWSKLDNDVALEVFYNSKSSSSSLSRSSVKTGRVINIQ
RGIFLDPSQEVGYEALVKCIPT
NT seq 4209 nt   +upstreamnt  +downstreamnt
atgtctgtaaagaaacatctcaaggcagcaaaaaatgccttagtctccaatgatccggac
tcgtgtatagaatatgctgaggaagtattgaacttggagcaggacaactatttcgcaaat
atttttttgggaaaagcttatcacttgcggtctgatgcattgaatgccactaaatactac
aagacttgttgtgaaatagatcccatgaacgaactaggatggaaaggactcttgttgttg
gcaagagaatcagatgactatgagtcatttctcagcattttgaaagggtacgctgaaatt
aaaactaagaagaacgaatctttgcaagagattgcaaaagaagttgagatttacttgaaa
aaatttgagaagaaccaagacttatgtattgctgttcttgatagtactacttcatttgga
ttcttgggcaggctggtgggaaacccaatcattccagaagaaagatcgttgatcttaata
atcgataaacttaagcataaggaagaaggagttattgctacaaacataaaaagggccaaa
ataaagacagctaataatatacccctggagattcagaataaattaaactctatcaagtgg
gcggtgtattctaaatccatgctacccgattatatgtcacgattattggaaatttgtgag
gatgatgacttgcaaaaaaaatacaatcacctgtggttatcgtaccagctcgatgtccta
tcctgcgcacccaacggtgatgctaagactggtttgcagcgaaggatctttgtagcctgc
gaaggtattgttgctgtcaaaagggatgttaggctggcttgggacatttatttgaattgg
cttgatccgcaaaatgtcgatgatttgcccctttggttgctgtgtgattatattaggcta
tttggtatggaaggcttgggttcgatcttatacggctttgtttactctgattactcaaat
tatagcgaggataaagtaagaaagtacctcacgactgaagaaacgtatagcgaagaaaac
agcgaaggaaaaagagcagtgcactttgttgatgtgcaaaatgatgaagaactgctcaac
cagttcaaatcagatctcactgtatccacagccctcaacgatgcagagctaatgtctttt
tacgttaaaagcattgagaaagcttcaacctctctgcttgcttgtagaatcgtaagtgaa
ttctacttatcgctgaaggagtacaaatttggattaatgtattgccgtaaaggtatcaat
ctactaactaaagtattgaaagattatggtttgagtttaccacatacgaaagaatcccta
ctattggatttggcatctatttatacgtactatgatgctccaaaagatcatccgagggct
ttcaaactctatgagtctattttgcaaaaaaatccttccaacccgaaagctaagatcggg
aaatcgttaattttccttcaattaggggagttcaataaggctaaagaattacttcaaaca
atcttcgatgcaaacttagaagctaaggcctatcttggctggtgcgaaattaatttaggg
aatctcgaattcggtaggaatcttcttacttcttgtttaaaggataccagtcttcaagat
gaagaaatgaaagttgagattcaatggaggttggctcattcgtatttacaagaagttcaa
gaagttaagaatttacatgatcgatacttagtcgaaggaaacattagagaagcttattca
aacttggttgtgtgtttaaagcaggatgctacatacgcacctgcttacacgactttggga
atagtttatgaagactatcttaatgactcgaaaagggccaataagtgctactataaagca
tttgagttagatataaggcagctggagtccgcaaggcgattagtggttaactttgctttg
gagccagattgggaatctgtacgagtacttgcacagcgagtggttgattctgacaccagc
agaagtattttggaaggcgcagttgatccggcatggccgtaccgaagtctagggtgcgcc
ttattagaagttcaagaagatgttaaagcaattgcctgttttcagtctgccttaaggctc
gattcgaaagatactgagtcctgggttggattgggtcaagcttatttgagcggaggtcga
ttggaagcttctataaaagttttcaatcatatcttgaataatctagactccaactggttt
acctcgtatatgttggctttatccttatcttatggaggtcagtttgctgagggtatgtca
attcttcagaaattgcattctactaggcctaaagagaagtgtattttaaccgctttgatt
gagtcattcttgaccaaaagccaagatgacttatctagagggtttgttgggcgttgcatt
gaagccagcataatatcattggattttgtttttcagctctcagaagttgatattcattgc
tataaatcttggaaatatctttccgaggctattctcatatttactaaggttaaaaattcg
ttaccaagctactatgtgaacaagatttctgctatttcgaaaagagttgccatttcaaga
agtgatctctgtgaaatgggcgatggtttggagtataggaaaggactcttagttgaagca
gaaagtgcaacacattttgaccgagcaatatcctacatggttcaaagtgcgaagaccgca
attcaggttctttcacaaaaatcctcaaataagttgagagcttccttatattacaatctg
gggttaatatattatcacgctttcacattgacgaataagctcctctatttgaaatgttcg
attaagcctctacagagagcaatcctgattgaaccattggtggcagattattggatagct
ctcggaaattgtactattctcaagaacgctcgagttgcccagcactgctatattaaggcg
tcatcaatatcctcaattaatcactccgtgtttgttaatttgggagcactatatttaatc
gcgggcgacactgatttagccaaaatttcgtttcatagagccttaagtatgcaaccgaac
gaatatttggcttgggaaggcctggccctatcaagaaatgaacgtaccccagatgcaact
agtacgtttagccttttcgcacatgccatggtgctctccaatggaaagtcgccccttgca
caactcttgtacggatttcaagttttgaagaaatttgcaatgcaaaacaaattttacgga
cacactattactgaaaggcaggagatcagtttggcttgcggcctcatgttgaggtacctc
aaattagattcagagaacgagtttgcgttattcgtgacattaagtttaatcgaactcact
caaaagtttgaacttggtgtagaattagcgaaaaacttgttcagttcactagaaagaact
tacagagaaagagggagtgtaagtgtattgtatcaacttacagcagccaaatcacaacag
gcaagactttacttggggtccggacagtacggcaatgcgattatggctgcaaagatggcg
atggatatgtcggaagacgatgttctacctcgaaattcacatgtcttgaaatgcgtctta
tcatctagatcagtgatagcgctttcttatttcttcaatggccagctttcaaaagcactg
tctcaactgaaagtttgtctcgaaaattcggattcctatagattggtcatcttgcttgca
caaatccttcacacttttgggaaccaggatgcaaagacagtagcaatggaagaattattt
aaccatatcgagaaacgagattcttccttaccaattaccctaactatgggtgctattgct
attagtgaggatcttgaagatttacttcctgtggtaaatgaggaccttaaatcactatcc
tttgatcaattagctgcagacagctccagaaatgtaccacaaatggtccatttaatcaac
cgtaaactggacattaaagagaatgtatggcagaaagttgcatttctattcccaaatgat
ggcaaaacctggtccaaattggataatgacgttgcacttgaagtcttttataattcaaaa
tcttcgagttcttctctcagtaggtcttctgttaaaacgggaagggttatcaatatccaa
aggggtatattcttagatccctcacaagaagtaggttacgaggcattagttaaatgcatt
ccgacataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (43)   

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