KEGG   Panthera pardus (leopard): 109255459
Entry
109255459         CDS       T06062                                 
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
ppad  Panthera pardus (leopard)
Pathway
ppad03015  mRNA surveillance pathway
ppad03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppad00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    109255459 (PABPC4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109255459 (PABPC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppad03019]
    109255459 (PABPC4)
   03041 Spliceosome [BR:ppad03041]
    109255459 (PABPC4)
Messenger RNA biogenesis [BR:ppad03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     109255459 (PABPC4)
   mRNA cycle factors
    Stress granule specific factors
     109255459 (PABPC4)
Spliceosome [BR:ppad03041]
 Complex C
  Other components
   Complex C specific factors
    109255459 (PABPC4)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 RRM_occluded RRM_3 ApbA_C
Other DBs
NCBI-GeneID: 109255459
NCBI-ProteinID: XP_019285718
Ensembl: ENSPPRG00000024727
UniProt: A0A9V1EPI1
Position
Unknown
AA seq 660 aa
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTT
AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQTLAPRAAVAAAAPRAVAPYK
YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS
NLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq 1983 nt   +upstreamnt  +downstreamnt
atgaacgctgcggccagcagctaccccatggcctccctctacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtacgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccggctgacgctgagcgggccttggataccatgaactttgatgtgattaagggaaag
ccaatccgtatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaat
gtcttcatcaagaatctggacaaatctatagataacaaggcactttatgatactttttct
gcttttggaaacattctgtcttgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaagaggctgctgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgggaa
gccgagcttggagccaaagccaaggagttcaccaatgtttatatcaaaaactttggggaa
gaggtggatgatgagagcctgaaagagctgtttagtcagtttggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggccgtggaagagatgaatggaaaagaaatcagtgggaaagtc
atttttgtaggccgcgcacagaagaaagtggaacggcaggccgagttaaagcggaaattt
gaacagctgaagcaagagagaattagtcggtatcagggagtgaatctctacattaagaac
ttggatgacaccattgatgatgagaagttaagaaaagagttttctccttttggatcaatc
accagcgctaaggtaatgttggaggatgggagaagcaaagggtttggctttgtctgcttc
tcatctcctgaagaggcgaccaaagcggtcactgagatgaatggacgcatcgtgggctcc
aagccgctgtacgtcgccctggcccagagaaaggaagagagaaaggctcacctgaccaac
cagtatatgcagcgggtggctggaatgagagcacttcctgccaatgccatcttaaatcag
ttccagcctgcagctggtggctactttgtgccagcagttccacaggctcagggaagacct
ccgtattacacacctaaccagttagcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccagtctgggcctcgtcca
gctcttcgccatctggctccaactggtaatgctccggcctctcgtggcctccctactact
gctcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggtgttcccacagctgtgcag
accttagcacctcgtgctgctgttgctgctgctgctcctcgggctgtcgcaccttataaa
tacgcttccagtgtccgcagccctcaccctgccatccagcctctgcaggcaccccagcct
gcggtccatgtgcaggggcaggagcccttgaccgcctccatgttggctgcagcacccccc
caggaacagaagcagatgttgggagaacgtttattcccactcatccaaaccatgcattca
aacctggctggaaaaatcacaggaatgctgctggagattgacaactctgagctgctgcac
atgctggagtcccctgagtctctccgctccaaggtggatgaagctgtggcggttctgcag
gctcatcatgccaagaaagaagctgcccagaaggtgggcgctgttgctgctgctacctct
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (10)   
   UniProt (1)   
   RefSeq(pep) (9)   
DNA sequence (9)   
   RefSeq(nuc) (9)   
Protein domain (7)   
   Pfam (7)   
All databases (36)   

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