KEGG   Pectobacterium parmentieri RNS08.42.1A: A8F97_00635
Entry
A8F97_00635       CDS       T04513                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
ppar  Pectobacterium parmentieri RNS08.42.1A
Pathway
ppar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A8F97_00635
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppar03019]
    A8F97_00635
   03016 Transfer RNA biogenesis [BR:ppar03016]
    A8F97_00635
Enzymes [BR:ppar01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     A8F97_00635
Messenger RNA biogenesis [BR:ppar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     A8F97_00635
Transfer RNA biogenesis [BR:ppar03016]
 Prokaryotic type
  tRNA degradation factors
   A8F97_00635
SSDB
Motif
Pfam: RNB CSD2 OB_RNB HTH_12 S1 Rho_RNA_bind OB_Dis3
Other DBs
NCBI-ProteinID: AOR57423
UniProt: A0A0H3IA19
Position
145924..148380
AA seq 818 aa
MSQDPFLEREAEKYESPIPSREYILAHIAKRDTPIGREELAADLQLTGEEALEALRRRLR
AMERDGQLIFTRRQCYALPEKLDLLRGTVIGHRDGFGFLRVEGRKDDLYLSAEEMKRAIH
GDVVLAQPLGADRKGRREGRIVRVLEPRTGQIVGRYFVDAGIGFVVPDDSRLSFDILIPK
EEINGARMGFVVVVELTQRATRRTKAVGKIVEILGDNMGTGLAVDIALRTHDIPHTWPPK
VEEQVKDLSEEVPEAAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEQKRGGGWRLWVAIA
DVSYYVRPNTALDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
AQGKLSSYKFYEAVMSSHARLTYTKVWNILQGDAELREHYKPLVGGLEELHHMYKALEHA
REVRGGIAFETEEAKFIFNAERRIDRVEAVVRNDAHKLIEECMILANISAARFVEKNEEP
ALFRVHDQPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAELMNEVAERPDREMLQTMLL
RSMKQAIYDPENRGHFGLALTSYGHFTSPIRRYPDLSLHRAIKYLLSDRHERWTSTGGWH
SDINEMLQLGMHCSMTERRADEATRDVADWLKCDFMQDHVGEVFTGIIASVTGFGFFVRL
KDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESRGQVYRLGDEVEIRVEAVHMDERNIDFA
LISSTRKVRGEGKTARDRTKKPESREAKPSRRRRSPSKAAANFEPDAAFRKEGDRSATTD
KPKVKPKKNRDKAKKNAEKTRKIAAATKAKRAKKKSAE
NT seq 2457 nt   +upstreamnt  +downstreamnt
atgtcacaagatccattcctggaacgagaagcagaaaaatacgaatcccctatccctagc
cgtgaatatattttggcgcacatcgccaagcgcgataccccgatcggtcgggaagaattg
gccgccgacctgcaattaaccggagaagaagccctcgaagcgctgcgccgccgtctgcgt
gcaatggagcgcgatggccagcttatttttacccgccgccaatgctatgcgttgccggaa
aagctcgatctactgcgtggtacggtcatcggtcaccgcgatggcttcggtttcctgcgt
gtggaaggccgcaaagacgatctttacctgtcggctgaagagatgaaacgggcgattcac
ggcgatgttgtgctggcgcaaccgctgggtgccgatcgtaaaggacgccgcgaagggcgt
attgtacgagtgctagaaccgcgtaccggacaaattgtcggccgctattttgtcgatgct
ggtatcgggtttgtcgtaccggatgatagccgcctgagctttgatattctgatcccgaaa
gaagaaattaacggcgctcgcatgggcttcgtggttgtcgttgagctgacacaacgcgcc
acgcgccgcacgaaagcggtcggtaagatcgttgagatcctcggtgacaacatgggcacc
gggctggcagtggatattgccctgcgtacccacgatattccgcacacctggccgcctaaa
gtcgaagaacaggtgaaggatctttccgaagaggtgccggaagccgcgaagaaaggccgt
gtggatctgcgtaagctgccgctggtcacgattgatggcgaagatgcccgcgattttgat
gacgccgtatactgtgaacagaaacgcggtggcggctggcgcttgtgggtcgcgattgcg
gacgtgagctactacgtgcggccgaatacggcgcttgaccatgaagcgcgggcgcgtggc
acatcggtgtacttcccgtcgcaggtggtaccgatgctgccggaagtgctgtcgaacggg
ctgtgttcgcttaatccgcaggttgatcgcctgtgtatggtctgtgaaatgaccgtctcg
gcacagggtaagctgtcgtcctacaaattctatgaagcggtgatgagttcacacgcgcgt
ctgacctacaccaaagtctggaacattctgcaaggcgatgccgaactgcgtgagcactac
aagcctttggtcggcgggctggaagagctacatcacatgtataaagcgttggaacacgcg
cgtgaagtacgtggtggcatcgcgtttgaaaccgaggaagcgaagtttattttcaacgcc
gaacgccgtatcgatcgtgtggaagccgtggtgcgtaatgacgcgcacaagctgatcgaa
gagtgcatgattctggcgaacatctccgctgcaagatttgtggagaaaaacgaagaacct
gcgttgttccgcgtacacgatcagccgagcgaagaccatgtcttagccttgcgcagcgtg
ctgggtgaattggggcttacgctgaaaggcggaatgaagccacagccgaaagactacgcg
gaattaatgaacgaggtggcggagcgtcccgatcgggaaatgctgcaaaccatgctgctg
cgttcaatgaaacaggcgatttatgatccggaaaaccgcggtcacttcgggctggccttg
acgtcttacggccacttcacgtcgccaattcgtcgttatcctgatctgtcgttgcaccgt
gcgattaagtatctgttgagcgatcgtcatgagcgttggacgtcaacgggcggttggcat
agcgatattaacgagatgctacagttgggtatgcactgctcgatgacggagcgccgtgcg
gatgaagccactcgcgacgttgcggactggctgaaatgcgattttatgcaggaccatgtg
ggcgaagtctttacggggattatcgccagcgtgaccggttttggcttcttcgtgcgcctg
aaagatctgtttatcgatgggctggtacacgtttctacgctggataatgactactaccgt
tacgataatatcggtcagcgactgatcggcgaatcgcgcgggcaggtttatcggctgggt
gatgaagtagaaatccgtgttgaagccgtgcatatggacgagcgcaacattgatttcgcg
ttgatttccagtactcgcaaggtgcgcggcgaagggaaaaccgcccgtgatcggacgaag
aaaccggagtctcgtgaggcgaagccaagtcgacgccgtcgtagcccaagcaaggccgcc
gcaaattttgaaccagatgcggcattccgcaaagaaggcgatcgcagcgcgacgacggat
aaaccaaaagtgaagccgaagaagaaccgcgataaagcgaaaaagaacgcagaaaaaacg
cgtaaaattgccgccgcgaccaaggctaaacgcgcgaagaaaaagtctgcggagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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