KEGG   Pectobacterium parmentieri RNS08.42.1A: A8F97_14625
Entry
A8F97_14625       CDS       T04513                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ppar  Pectobacterium parmentieri RNS08.42.1A
Pathway
ppar03410  Base excision repair
ppar03430  Mismatch repair
ppar03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    A8F97_14625
   03430 Mismatch repair
    A8F97_14625
   03440 Homologous recombination
    A8F97_14625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppar03400]
    A8F97_14625
DNA repair and recombination proteins [BR:ppar03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     A8F97_14625
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     A8F97_14625
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A8F97_14625
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB
Other DBs
NCBI-ProteinID: AOR60122
Position
complement(3227976..3229730)
AA seq 584 aa
MITQLRRRPLVEDIDLPDTVPPLLRRLYAQRGVKGAQELERSLSGLLNYRLLSGIDKAID
LLQLALAEKRCIVIVGDFDADGATSTTLAVLALRSMGGANVKYLVPNRFEDGYGLSPAVV
AQAAALGAELIVTVDNGISSHAGVEDAHRRGISVLVTDHHLPGETLPDADAMINPNLPDC
AFPSKALAGVGVAFYLMMALFVRLRDSDWFTQPLFTKQGLAKPNLTELLDLVALGTVADV
VPLDANNRILVAQGLNRIRAGECRPGIRALLEVANRDASQLVASDLGFAIGPRLNAAGRL
DDMTVGVELLLSNDITQARMLANDLDGLNQDRREIEQGMQVEALRLCESLERTRTELPYG
LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGMLKGSGRSIAGLHLRDALERLDT
LYPGMMDKFGGHAMAAGLSLHETQFEDFRQRFGELVGEWLDPSQLEGVVWSDGELALPEL
NLLSTAEMLRYAGPWGQAFPEPTFDGRFRILQPRLLKERHLKAMFEPIGATGTVPLLDGI
AFNIDTTIWPDPSIKEVEMVYRLDINEFRGKRSVQLLIQHLWPR
NT seq 1755 nt   +upstreamnt  +downstreamnt
atgattacccaactccgccggcgtccgctggtggaggatattgatttacctgacaccgtt
ccgcctttattgcgtcgtctttatgcgcagcgcggcgttaaaggtgctcaggagctggaa
cgtagcctgagtggtttactcaattaccgtttactcagcggcattgataaagcgatcgac
ctgctgcaacttgcgttggcagagaagcgctgcatcgtgattgtcggcgactttgatgcc
gatggcgccaccagcaccacgcttgccgtcttggcgttgcgtagcatgggcggcgcgaac
gtgaaatatctggtgccgaaccgttttgaagatggctacgggctaagcccggccgtggtg
gcgcaggctgccgccttgggcgcggaacttatcgttactgttgataacgggatatcctcc
catgcgggtgtcgaggatgcacatcggcgcggtatttctgtgctggtgaccgatcaccat
ctaccgggcgaaaccctgcctgacgccgatgcgatgattaaccccaatctgccagattgt
gcattcccttctaaagcgctggctggcgtgggggtggcgttctatttgatgatggcgctg
tttgtacgcctgcgcgacagcgactggtttacgcaacccttatttacgaaacaggggctg
gcgaagccgaatcttaccgaattattggatctggtggcgctgggcacggtggctgacgtg
gtgccgctggatgccaacaaccggattctagtggctcaggggttgaatcgcattcgcgcc
ggagagtgtcgtccgggcattcgagcgctgctggaagtggctaatcgtgatgccagccaa
ttggtcgccagtgatttaggttttgccatcgggccgcgcctcaatgccgctggacggttg
gacgatatgacggtcggggtcgagctgctattgagtaacgacattactcaggcgcgcatg
ttggctaacgatttagatggtttgaatcaggatcggcgcgaaatcgaacaggggatgcaa
gtcgaagccttgcgcctgtgcgaatcactggagcgtacccgcaccgaattgccttacggt
ctggcgatgtatcatccagagtggcatcagggcgttgtgggtattctggcttcacgcatt
aaagagcgttttcatcgtccggtgattgcttttgcgcctgcgggcgatggtatgctgaaa
gggtcgggacgttctattgccggtctgcatctgcgtgatgcgttggaaagattagatacg
ctataccccggcatgatggataagttcggcggacacgcgatggcagcagggctatcgctg
catgagacgcagttcgaggatttccgtcagcgcttcggcgaattagtgggggagtggctc
gatccgtctcagcttgaaggcgtcgtctggtctgatggcgaactggcattgccggagctg
aatttgctctcaacggcagaaatgctgcgttatgcggggccgtggggacaagcgttccct
gaaccgacgttcgatggccgtttccgcattctgcaaccccgtttgctcaaagaacgccat
ttgaaagcgatgtttgaaccgatcggtgcaacaggcactgtgccgctgttagatggcatc
gcgtttaatattgataccaccatctggcccgatccgagcattaaagaagtggaaatggtg
taccggctggatattaacgagtttcgcggtaaacgctcggtgcaattgttgattcagcat
ctgtggccgcgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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