KEGG   Pectobacterium parmentieri RNS08.42.1A: A8F97_20455
Entry
A8F97_20455       CDS       T04513                                 
Name
(GenBank) ATP-dependent RNA helicase RhlB
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
ppar  Pectobacterium parmentieri RNS08.42.1A
Pathway
ppar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A8F97_20455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppar03019]
    A8F97_20455
Enzymes [BR:ppar01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     A8F97_20455
Messenger RNA biogenesis [BR:ppar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     A8F97_20455
SSDB
Motif
Pfam: DEAD Helicase_C ResIII ERCC3_RAD25_C CCDC138_C AAA_22
Other DBs
NCBI-ProteinID: AOR61231
UniProt: A0A0H3IBF6
Position
complement(4503161..4504453)
AA seq 430 aa
MSKTHLTEQKFSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYG
GDGYDKQLKVLESGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPAAAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLLEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILE
EFTQGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLA
CEEYALNLPAIETYIGHGIPVSKYNSDALMNDLPAPKRLTRPPRSNNGPRRHSSAPRRSG
APRNNRKRAD
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgagcaaaacacacttaactgaacagaagttttccgacttcgccctgcacccgcaggtt
atcgaagcccttgaaagtaaagggtttcataactgtacgcctattcaggcgttagctctg
ccattagctttgtcagggcgtgatgttgcgggtcaggcgcaaaccggtaccggcaagacg
ctggcttttctcgcgtctactttccattatttgctttcacaccctgcaaacgcagagcgt
caaaccaatcaaccgcgtgccttaattatggcacccacccgtgaactggctgtccagatt
cactctgacgcagaagcgctgtctcacctgactgggctaaaattgggtttggcctacggt
ggcgacggctacgacaaacagcttaaagtgctggaaagcggcgttgatattttggtcggc
accactggtcgcctgatcgactatgccaaacaaaaccatattaatttgggcgcgatccag
gtcgtcgtgctggatgaagcggatcgcatgtacgatctcggcttcatcaaagatatccgc
tggttgttccgccgtatgccagccgctgcacagcgcctgaacatgctcttttccgctacg
ctctcctaccgggtgcgtgaactcgcgtttgaacagatgaataacgctgagtacgtggaa
gtcgaaccagaacagaaaaccggccaccgcattaaagaagaactgttttatccatccaac
gaagagaaaatgcgcctgctccagacgctgttggaagaagagtggccggatcgctgcatt
attttcgccaataccaagcatcgctgtgaagacgtctggggccacttggctgccgacggc
caccgcgtcgggctgctgacgggcgacgtggcgcagaaaaaacgcctgcgtattctggaa
gaatttactcaaggtaatctggatattctggtggcaacggacgttgcagcgcgcggtttg
cacattccttctgtaacccacgttttcaactacgacctgccggatgactgcgaagactac
gttcaccgtattggccgtactggccgtgcagggcaaagtgggttttctatcagtctggcc
tgcgaagagtacgcactgaatctcccggctatcgaaacctatatcggccacggtatcccg
gtcagcaaatacaacagtgacgcactgatgaacgatttacctgcgcctaagcgtttaaca
cgcccaccgcgttctaataatggcccgcgccgacatagtagtgcgccacgccgcagtgga
gcgccccgtaataaccgtaaacgagcggactaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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