KEGG   Pseudomonas putida BIRD-1: PPUBIRD1_2090
Entry
PPUBIRD1_2090     CDS       T01975                                 
Name
(GenBank) AMP-dependent synthetase and ligase
  KO
K01897  long-chain acyl-CoA synthetase [EC:6.2.1.3]
Organism
ppb  Pseudomonas putida BIRD-1
Pathway
ppb00061  Fatty acid biosynthesis
ppb00071  Fatty acid degradation
ppb01100  Metabolic pathways
ppb01212  Fatty acid metabolism
ppb02024  Quorum sensing
Module
ppb_M00086  beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:ppb00001]
 09100 Metabolism
  09103 Lipid metabolism
   00061 Fatty acid biosynthesis
    PPUBIRD1_2090
   00071 Fatty acid degradation
    PPUBIRD1_2090
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PPUBIRD1_2090
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01004 Lipid biosynthesis proteins [BR:ppb01004]
    PPUBIRD1_2090
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ppb04147]
    PPUBIRD1_2090
Enzymes [BR:ppb01000]
 6. Ligases
  6.2  Forming carbon-sulfur bonds
   6.2.1  Acid-thiol ligases
    6.2.1.3  long-chain-fatty-acid---CoA ligase
     PPUBIRD1_2090
Lipid biosynthesis proteins [BR:ppb01004]
 Acyl-CoA synthetase
  Long/very long chain acyl-CoA synthetase
   PPUBIRD1_2090
Exosome [BR:ppb04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   PPUBIRD1_2090
  Exosomal proteins of breast cancer cells
   PPUBIRD1_2090
SSDB
Motif
Pfam: AMP-binding AMP-binding_C DNA_pol_IIIA_C
Other DBs
NCBI-ProteinID: ADR59732
Position
2363448..2364947
AA seq 499 aa
MIVGFVEEHATERSDSVALRFDNKVLSYSALAREIDRTVVLLKKAGVSADTTIAVYCENN
IEIMVLYYAMSKLGGTFVPINAVLSAAEVSYILGHADVKFLFTDKKLHENAVTAVGDTAC
SLIEVSEFFSNILPGTEQVEQAEAIKNDFLIIYTSGSTGVPKAVLYSQPAEVAGNASLID
MWEVTPNDKLLVALPLGFLYGLSTAASMALQAGCETIIQRRFHPREALEAFVEHGVTVFQ
GVPTMFSMMLEYAEQNGLDFDLSSMRAVISAGAPLASDLRTRFKSKFGVEIQDYYALTEV
RPVFGKFAGDSTPVPTGAIGKASPCVVIKIVDGDGHEVGPGVTGEILVRAPATTSGYYKA
PEVSAAAFIDGFFRTGDLGHVDAQGFYYLTGRIKDIIIKGGANIAPAEVEEALLSHPKVV
QASVVGVADQKFGELPVAYFVPAQGAQPTPEDLAEYCRLMLAEFKVPSEFIALAEMPLGN
TGKIDKKVLLKMWKEKANV
NT seq 1500 nt   +upstreamnt  +downstreamnt
atgatcgtaggttttgttgaagagcacgctactgagcgaagcgatagtgttgctttgcgg
tttgataacaaagtgctcagttatagtgcgttggcgcgcgaaattgatcgaactgttgtc
ctgttgaaaaaagcaggcgtcagtgctgataccaccatcgcagtatactgcgagaataat
attgagatcatggtgttgtactacgccatgtcgaagctcggcggaacattcgttccgatc
aatgcggtgctcagtgcagcggaagtcagctatatcctgggccacgcagatgtaaaattc
ttgttcactgacaaaaaactgcatgagaacgccgtgacggcggtcggcgatacagcatgc
agcctgattgaagtcagtgaattctttagcaacatcctgcctggcactgaacaggtcgaa
caggctgaggcgatcaagaacgacttcttgatcatctacacctcgggctccactggggta
ccaaaggcagtgctctacagccagccggctgaggttgcaggtaacgcttccctcatcgac
atgtgggaggtcaccccaaatgacaagctgctggtcgctctcccgctgggcttcctgtat
gggctctcgaccgctgcctccatggcactgcaggccgggtgcgagaccatcatccaacgt
cgattccacccgcgtgaggctcttgaggccttcgttgagcacggtgtcaccgtattccag
ggtgtgccaaccatgttctccatgatgctggagtacgcagagcagaacggcctggacttt
gacctgtcctccatgcgcgctgtcatctcggcgggcgctcctctggcaagtgacctgcgc
acccgctttaaaagcaagttcggtgtcgagatccaggactattacgccctcaccgaggtg
cgcccggtctttggcaaatttgccggggatagcactccagtgcctacaggcgccatcggc
aaagcaagcccatgcgttgtgatcaagatcgtcgacggtgatggccatgaggttggccca
ggcgtcactggcgaaatcctggtgcgtgctcccgctaccacctcgggttactacaaggcg
cctgaggtcagtgctgcggcctttatcgacggtttcttccgcaccggcgaccttgggcat
gtcgatgctcaaggtttctattacctgactggccggatcaaggacatcatcatcaaaggc
ggagccaacatcgccccggctgaggtggaggaggcgctgctgtctcatcctaaagtcgtg
caggcttctgtcgtcggcgttgctgaccagaagttcggcgagctgccggttgcttacttt
gtgccggcgcaaggtgctcagcccacgccagaagacttggctgaatactgccgtctgatg
ctggctgaattcaaagtgccgagcgagttcattgcacttgcggaaatgccgctcgggaac
actgggaaaattgataagaaggtgctgttgaagatgtggaaggagaaagcaaatgtctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (6)   
   KEGG PATHWAY (5)   
   KEGG MODULE (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (28)   

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