KEGG   Pseudomonas putida BIRD-1: PPUBIRD1_4010
Entry
PPUBIRD1_4010     CDS       T01975                                 
Symbol
rnhB
Name
(GenBank) RnhB
  KO
K03470  ribonuclease HII [EC:3.1.26.4]
Organism
ppb  Pseudomonas putida BIRD-1
Pathway
ppb03030  DNA replication
Brite
KEGG Orthology (KO) [BR:ppb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PPUBIRD1_4010 (rnhB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppb03032]
    PPUBIRD1_4010 (rnhB)
Enzymes [BR:ppb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.4  ribonuclease H
     PPUBIRD1_4010 (rnhB)
DNA replication proteins [BR:ppb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    RNase H
     PPUBIRD1_4010 (rnhB)
   Elongation factors (archaeal)
     PPUBIRD1_4010 (rnhB)
SSDB
Motif
Pfam: RNase_HII E1_dh
Other DBs
NCBI-ProteinID: ADR61593
Position
complement(4487214..4487837)
AA seq 207 aa
MQIGLDFNLVEDLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREALF
DEICEKALSFCIARAEVEEIDSLNILQATMLAMQRAVEGLHITPKLALIDGNRCPKLAVP
AAPVVKGDSQVPAIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLG
PTPIHRRSFAPVRAAWEAREGVTDSLI
NT seq 624 nt   +upstreamnt  +downstreamnt
atgcaaattggactggacttcaacctggtagaagacctggtcgccggcgttgacgaagtg
ggccgtggccccctgtgcggcgcggtggtaacggcggcagtgattcttgatcccgcgcgg
ccgattctcggtctgaacgattcgaagaaactcaccgaagccaggcgtgaggcgctgttc
gacgagatctgcgaaaaggccttgagcttctgcatcgcccgtgccgaagtcgaggaaatc
gacagcctgaacatcctgcaggccaccatgctggccatgcagcgggcagtggagggcttg
cacattacgccgaagctggccctgatcgatggcaatcgctgcccgaagctggcggtgccg
gcagcaccggtggtcaagggggatagccaggtgccggccattgcggcggcatcgatcctg
gccaaggtgacccgtgatcgggaaatgagtgcgttcgaactgatctacccgggttatggc
attggcgggcacaagggctacccgaccccggtgcatctggaggcgttggcgcgccttggg
cctacgcccattcatcggcgctccttcgccccggtgcgggcggcctgggaagcgcgcgaa
ggcgtcaccgattccctgatctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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