KEGG   Pseudopropionibacterium propionicum: HMPREF9154_1687
Entry
HMPREF9154_1687   CDS       T02180                                 
Symbol
rtcB
Name
(GenBank) protein RtcB
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
ppc  Pseudopropionibacterium propionicum
Brite
KEGG Orthology (KO) [BR:ppc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ppc03016]
    HMPREF9154_1687 (rtcB)
Enzymes [BR:ppc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     HMPREF9154_1687 (rtcB)
Transfer RNA biogenesis [BR:ppc03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    HMPREF9154_1687 (rtcB)
 Prokaryotic type
   tRNA splicing ligases
    HMPREF9154_1687 (rtcB)
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: AFN47321
Position
1825387..1826592
AA seq 401 aa
MSIYPVSLSGTVNTLMWADETGIEEPAIRQLRNVSALPWTHGLRVMPDVHYGKGATVGSV
IAMHQAVAPAAVGVDIGCGMTAVRTNLSSDRLPDDLGRLRRTIERGVPVGNGAHKDHSPT
IDRHGRLKRRFKEMREGFESLQARRLARSFGRLETKAVNQIGTLGGGNHFIELCAGDDDR
IWVTLHSGSRGIGNRLAQEHMEVAQSLTHNKGLVDRDLAVFLSHTPQMEAYLHDLWWAQS
YALLNRDVMLASICDDLSRHIPRIAFEDPIRCHHNYVAVETYDDLELIITRKGAIRAGKG
DLGVIPGSMGTGSYIVRGLGNPASYESASHGAGRRMSRSQAKQRFTTEDLAEQTRGIECR
KDPGVIDEIPAAYKDINEVIRAQSDLVEVVARLRTLLCIKG
NT seq 1206 nt   +upstreamnt  +downstreamnt
atgtccatctacccggtgtcgctgagcggcaccgtgaacaccctcatgtgggccgacgag
accggcatcgaggagcccgctatcaggcagctccgcaacgtctccgcccttccgtggacc
cacgggctgcgcgtcatgcccgacgtccactacgggaagggagccaccgtcggatccgtg
atcgccatgcaccaggccgtcgcccccgccgcggtcggtgtcgacatcggctgcggcatg
accgcggtgcgcaccaacctgagttccgaccggcttcccgacgatctcggccggctccgc
cgcaccatcgagcggggcgtcccggtcgggaacggggcgcacaaggaccactcccccacc
atcgaccggcacggcaggctgaagcgccggttcaaggagatgcgggagggtttcgagtca
ctgcaggcccgccggctcgcgcgttccttcgggaggctcgagaccaaggccgtgaaccag
atcggcacgctcggcggcggcaaccacttcatcgaactgtgtgccggggacgacgaccgc
atctgggtgaccctgcactccggctcccgcggcatcggcaaccggctggcgcaggaacac
atggaggtcgcccagtccctcacccacaacaagggcctggtggaccgggacctggccgtg
ttcctgagccacaccccgcagatggaggcctacctccacgacctgtggtgggcgcagtcc
tacgcgttgctcaaccgtgacgtgatgctcgccagcatctgcgacgacctctcacggcac
atcccccggatcgctttcgaggacccgatccgctgccaccacaactacgtggccgtggaa
acctacgacgacctggagctgatcatcacccggaagggggcgatccgggccgggaagggc
gatctgggcgtgattcccggctccatgggaaccggatcgtacatcgtgcgggggctcggc
aacccggcctcctacgagtcggcctcgcacggcgcgggccggagaatgtcgcggagccag
gccaagcagcggttcaccaccgaggacctggccgagcagaccaggggaatcgaatgccgc
aaggatcccggcgtgatcgacgagatccctgccgcctacaaggacatcaacgaggtgatc
cgggcgcagtccgatctggtcgaggtcgtggcgcggctccggaccctgctgtgcatcaag
ggctga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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