KEGG   Pelobacter propionicus: Ppro_1864
Entry
Ppro_1864         CDS       T00436                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
ppd  Pelobacter propionicus
Pathway
ppd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Ppro_1864
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppd03400]
    Ppro_1864
Enzymes [BR:ppd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Ppro_1864
DNA repair and recombination proteins [BR:ppd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Ppro_1864
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 SH3_13 UvrD_C_2 HHH_5 Viral_helicase1 AAA_11 Helicase_RecD PIF1 nSTAND3 HHH_2 SLFN-g3_helicase AAA_28 AAA_22 NTPase_1 RsgA_GTPase MeaB TrwB_AAD_bind NACHT AAA_16 T2SSE ABC_tran UvrD-helicase AAA cobW AAA_14 MMR_HSR1 NB-ARC AAA_23 AAA_29 DnaB_C AAA_24 DEAD HHH MobB TsaE AAA_7
Other DBs
NCBI-ProteinID: ABK99475
UniProt: A1AQ55
Position
complement(2006218..2008404)
AA seq 728 aa
MKQPNSLDTPVERLSGSVERVTFHSEESGFCVLRTKVKGQRELITVIGSAASITPGEYIE
CIGIWTNDRTHGLQFKANQLKVVPPSTLEGIEKYLGSGMVKGIGPHFAKILVKAFKEDVF
TVIESEPEKLLTLPGIGRKRMEKVTSAWSEQKVIREIMVFLQSHGIGTGRAVRIYKTYGD
ESILKVTENPYRLALDIHGIGFKTADTLAMKLGIAADSLIRAQAGVRHVLQEIADDGHCA
APWVDLVKSAAELLEIPASIIEEAIHAEIAEENLIQEDIEGSACLFLIPLFRAESGTATS
ITRLLRGTPPWGVIDAEKAIPWVEAKTGLTLSSSQRDAVILALNSKVVVITGGPGVGKTT
LVNSILLTIQAKQMRVTLCAPTGRAAKRLSESTGIEAKTIHRLLEFDPQSFGFKRNKDNP
LETDLVVIDESSMVDIALMNKLLAAVPTNAALMIVGDVDQLPSVGPGSVLSDIIDSGVVP
TVRLTEIFRQAANSRIIVNAHRINKGEMPLKAEGTELSDFYFIPTNTPEEIHDKLIQVVT
ERIPKRFGLHPVKDIQVLTPTNRGGLGAHSLNAELQKALNEKAEPKVTRFGTTFAPDDKV
IQTVNNYDKEVFNGDIGQITEIDVEEGLLQVDYDGRTVEYEFGELDEVSLAYATSIHKSQ
GSEYPAVVIPLAMQHYTLLERNLIYTAVTRGKKLVTIIGQPKALAMAVKNRKSNKRLTKL
ASRISESG
NT seq 2187 nt   +upstreamnt  +downstreamnt
atgaaacagcccaattcgcttgatacccctgtcgaacgcctctccggttcagttgaacgg
gtcaccttccacagtgaagaatccggcttctgtgtgctccgtaccaaagtcaagggacag
cgggaactgattaccgttatcggttccgctgcatccatcacccccggtgaatacattgag
tgcattggtatctggacaaacgaccgaacccacggactacaattcaaagccaaccagttg
aaagtcgtaccaccaagcacacttgaaggaattgagaaatatctcggctcagggatggtc
aagggaattggtcctcacttcgccaagattctcgtcaaagctttcaaagaggatgtcttc
accgtaatcgaatctgaaccagagaagctgcttactcttcccggtatcggtcgaaagcgc
atggagaaggtgacaagtgcctggtccgaacagaaagtcattcgtgaaatcatggtcttc
cttcaatcgcacggaatcggaacaggacgagcggtcaggatatacaagacctatggcgac
gaatccattctcaaggtaactgaaaacccttacagactcgcactggatattcacggtatt
ggtttcaagaccgcagacactcttgccatgaagctggggatcgctgctgattcacttatt
cgcgctcaagccggtgtccgtcatgttcttcaggaaattgcagatgatggacattgtgct
gcgccatgggttgacttggttaaatctgcagccgaacttttggaaataccagcaagcatt
atagaagaggccattcatgctgaaattgcagaagagaaccttatccaggaggatattgaa
ggctcagcctgtctcttcctgatccctctgtttcgtgctgaatccggaaccgctacaagc
atcacccggctcctacggggaacacctccctggggagtaattgatgcagaaaaggctatt
ccctgggtagaagcaaagaccggcctgacactatccagttcccaacgtgatgccgtcatt
ttagctctcaacagcaaagtcgtggttattaccggtggtcctggtgttggcaaaacgacc
ctggtcaacagcatactgctcacgatccaggcaaagcagatgagggttactctctgtgca
ccgaccggacgtgctgccaaaagattgtcggaatcaaccggtattgaggcaaagaccatc
caccgcttgctggagttcgacccgcagtcattcggattcaagcgaaataaagataatccg
ctggaaaccgacctggtggttatagacgaatcttcaatggttgatatagccttgatgaat
aagcttctggctgccgttccaaccaatgcagctctgatgattgttggagacgttgaccaa
ctcccctctgtcggtcccggctccgtgctttcggatatcattgattcgggagtagtgcct
actgtgaggcttacggagatattccgtcaagcagcaaattcacgcatcatcgtcaatgcc
caccgaatcaataagggtgagatgcctctcaaagccgaaggcaccgaactatcggacttt
tatttcattccgaccaatactccggaagaaatccatgacaaactcattcaggttgtcaca
gagcgtatccccaagagatttggtcttcatccggtgaaagatatccaggtgcttacccca
acgaatcgtggcggtcttggtgcgcattcattgaatgccgagttgcagaaggcgctaaac
gaaaaggcggaaccaaaagtcacacgattcggcaccacctttgctcccgacgacaaggtc
atccagacggtgaacaactacgataaagaggtgttcaacggtgacatcggtcagattact
gagattgatgtcgaagaaggattattacaggttgattatgatggcagaactgttgaatac
gagttcggcgaactggatgaggtttctctggcctatgccaccagcatccataaaagccag
ggatcggaatacccagcggtggtgattcctttggccatgcagcattacacgctgttggag
cgcaatctgatatacactgccgtcaccaggggaaagaagctcgtgacgatcatcggtcaa
ccaaaggcgctagcaatggcggtcaagaaccggaagtcgaataagcgactgactaagctg
gcttctagaatatcagaatccgggtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (38)   
   Pfam (38)   
All databases (72)   

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