KEGG   Pediococcus pentosaceus ATCC 25745: PEPE_0404
Entry
PEPE_0404         CDS       T00409                                 
Name
(GenBank) Superfamily I DNA and RNA helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
ppe  Pediococcus pentosaceus ATCC 25745
Pathway
ppe03420  Nucleotide excision repair
ppe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PEPE_0404
   03430 Mismatch repair
    PEPE_0404
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppe03400]
    PEPE_0404
Enzymes [BR:ppe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PEPE_0404
DNA repair and recombination proteins [BR:ppe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PEPE_0404
   MMR (mismatch excision repair)
    Other MMR factors
     PEPE_0404
SSDB
Motif
Pfam: UvrD-helicase Viral_helicase1 AAA_19 UvrD_C_2 UvrD_C SLFN-g3_helicase AAA_30 DEAD DUF4351 NACHT
Other DBs
NCBI-ProteinID: ABJ67500
UniProt: Q03H22
Position
449829..452126
AA seq 765 aa
MAEGIFEYENRHLDEVLDKVDTAIAKAENDADNAEKDRSAIDKNFYNDVRINTSSYSGMM
DTAISIRQQQQLLSERENSWQHANKRLTTFKEMKKRPYFARIDFHEKGEKKDETIYIGLA
SFSDTADHFLIYDWRAPISSVYYDGKMGDVEYATPDGTQTVDLKLKRQFTIEDGKLISVY
DTDETIGDQMLLNALGSQSDVKMKSIVSTIQREQNKIIRNTAADLLFVQGAAGSGKTAAI
LQRVAFLLYRYRGNLNAGQVIMFSPNQLFNDYVDQVLPELGEQNMIQMTYYQFTRRRIPN
IDVENLQQRFDKKLTDAERKIEQFKGSLQFFKATTKYAKYLGTAGMRFRNIMFQGQPFAT
KEKIKDIYYSFNTTYNLGNRIEGTREALIRQLNQKVGSELRTKWVEEAVQNLSQEELHNL
FKNEPREFKDNDEEFKFLARQIVMKELKPVRNAIMRNRFLSINAQYVQMLRSFPKWYDLK
KVGVTEAEWDNHVDKVVNGLKEHQLTMVDTTAYLYLYDLITGKKGDRSMRYAFIDEIQDY
NAFQLAYIRFNFPRAKFTLLGDLNQSIYANETSDTLLAELSTMFDPEKTEVVQLSKSYRS
TQQITDFTKEILVKGEAIESFNRAGELPTVSINSSHQGMVEAVIEQLHRDRQDHETSAII
GRSYAECEQIADELKAAGEQVTLIRTENQRLVEGTIVVPSFLAKGLEFDSVIVWNTSAKI
YQTNRDEQLLYTICSRAMHRLLIVAENDLSPLITKIPENLYIKKA
NT seq 2298 nt   +upstreamnt  +downstreamnt
ttggcagagggaatttttgaatacgaaaatagacatttagatgaagttttagataaggtg
gatactgcaattgccaaagcagaaaacgacgccgataatgccgaaaaagatcgtagtgcg
attgataagaatttttacaacgatgttcgaattaacacttccagttattcaggtatgatg
gatactgcaatttcaatccgtcaacaacagcaattattatctgaacgcgaaaatagttgg
caacacgctaataaacgtttaaccacgtttaaagaaatgaaaaagcggccctattttgca
cgaattgattttcacgaaaaaggtgaaaagaaggatgaaaccatctatattggtttagct
tcattttcggacacggccgatcattttttgatttatgattggcgggctcccatttctagt
gtttactatgacggaaaaatgggcgatgtggaatatgcaacgccagatggcacgcaaacg
gtagacttgaagttaaaacggcaatttactattgaagatggtaaattgatttcagtttac
gatacggacgaaactatcggagatcaaatgctactaaacgcgttgggttctcaatccgat
gttaagatgaaaagtattgtttcaaccatccaaagagaacagaataaaattattcgaaat
accgcagccgatttactattcgttcaaggtgcagctggatcgggaaagaccgctgcgatt
ttacagcgggtcgctttcttgctttaccgttaccgcggaaatttaaatgctggacaagtc
atcatgttttcacctaatcaattgtttaatgattatgttgatcaagttttacccgaactg
ggcgaacaaaacatgattcagatgacctattatcaatttactagacgacggattccaaac
atcgacgttgaaaacttgcaacaacgttttgataagaagctcacggatgcggaacgtaaa
atcgaacaattcaaaggaagcttgcaatttttcaaagctactactaaatatgcgaaatat
cttgggacggcaggtatgcgattccgcaatatcatgttccaaggtcaaccgtttgctact
aaggaaaaaattaaagacatctattattcatttaatactacctataatttgggtaaccga
attgaaggaactcgggaagccttgatccgccaattgaaccaaaaagtaggtagtgaattg
agaactaagtgggtggaagaagcggtccaaaaccttagccaagaagaattacacaaccta
tttaaaaacgagccccgtgaatttaaggataatgatgaagaatttaaattccttgctcgt
caaatcgtaatgaaagaacttaaaccggttcgaaatgcgattatgcgtaatcgcttctta
agcattaatgcccaatatgtccaaatgctacgttcgttccccaaatggtacgatttaaag
aaagttggggtaacagaagcagaatgggataaccatgtggataaagtggtaaatggactt
aaggagcatcagttaaccatggtagatacaaccgcttatttatacttgtatgatttaatt
acgggtaaaaaaggtgatcgttccatgcgttatgcatttattgatgaaatccaagattat
aatgctttccaactagcttatattcggttcaattttcctcgagcaaaattcacactttta
ggagatttaaatcaatcaatttacgccaatgaaactagtgatactttattagcagagtta
tcaacaatgtttgatccagaaaagacggaagtagttcaactatctaagtcttatcgttca
acacaacaaattacagactttactaaggaaatcttggtcaaaggtgaagcaattgaatcc
tttaatcgcgcgggtgaattaccaacggtttcaattaatagtagtcatcaaggaatggtt
gaggcggtgatcgaacagcttcatcgcgatcgccaagatcatgagactagcgccattatt
gggcgtagctatgctgaatgtgaacaaatcgcggatgaattaaaagcagctggcgagcaa
gtaacgctaatccgaactgaaaatcagcgtttggtggaaggtaccatcgttgttccatct
ttcttagccaagggattggaatttgattcagtaatcgtgtggaatacttcagcgaagatt
tatcaaactaatcgggatgaacagttattatatacaatttgttcacgggcaatgcatcga
ctcttaatcgttgctgagaatgatcttagtccgttaattactaagattcctgaaaattta
tatattaaaaaagcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (44)   

Download RDF
DBGET integrated database retrieval system