KEGG   Pediococcus pentosaceus SL4: T256_05295
Entry
T256_05295        CDS       T02906                                 
Name
(GenBank) transcriptional regulator
  KO
K03530  DNA-binding protein HU-beta
Organism
ppen  Pediococcus pentosaceus SL4
Brite
KEGG Orthology (KO) [BR:ppen00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppen03032]
    T256_05295
   03036 Chromosome and associated proteins [BR:ppen03036]
    T256_05295
   03400 DNA repair and recombination proteins [BR:ppen03400]
    T256_05295
DNA replication proteins [BR:ppen03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    T256_05295
Chromosome and associated proteins [BR:ppen03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    T256_05295
DNA repair and recombination proteins [BR:ppen03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      T256_05295
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_2 DUF2267 HU-CCDC81_euk_1 Rpf1_C
Other DBs
NCBI-ProteinID: AHA05174
Position
complement(1037708..1037983)
AA seq 91 aa
MANKAELVDNVAKVTGLTKKDATAAVDAVFSSIQDDLKKGEKVQLIGFGTFEVRNRAARK
GRNPQTGKEIEIAASKVPAFKPGKALKDAVK
NT seq 276 nt   +upstreamnt  +downstreamnt
atggcaaacaaagcagaattagttgataacgttgctaaagtaacaggtttaactaaaaag
gatgcaaccgcagcagtagacgctgtatttagctcaattcaagatgacttgaagaagggt
gaaaaagttcaattaatcggttttggtactttcgaagtacgtaatcgtgcagctcgtaag
ggccgtaacccacaaactggtaaagaaatcgaaatcgcagcaagtaaagttcctgcattc
aagcctggtaaggctttgaaggacgctgttaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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