KEGG   Pseudomonas putida GB-1: PputGB1_2778
Entry
PputGB1_2778      CDS       T00650                                 
Name
(GenBank) excinuclease ABC, A subunit
  KO
K03701  excinuclease ABC subunit A
Organism
ppg  Pseudomonas putida GB-1
Pathway
ppg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ppg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PputGB1_2778
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppg03400]
    PputGB1_2778
DNA repair and recombination proteins [BR:ppg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PputGB1_2778
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PputGB1_2778
SSDB
Motif
Pfam: ABC_tran UvrA_DNA-bind AAA_21 nSTAND1 AAA_16 DnaJ_CXXCXGXG SMC_N AAA_29 RsgA_GTPase AAA_25
Other DBs
NCBI-ProteinID: ABY98672
UniProt: B0KU09
Position
3120521..3123037
AA seq 838 aa
MPPRSPSPTGFVRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRR
YFESVAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY
SRAGHYPAGQAMLYAEDFSPNTPQGACPECHGMGRVYQVTEATMVPDPSLTIRERAVAAW
PMAWQGQNQRDILVTLGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTRDALK
RKLEPSYQGTFMGARRYVLHTFMHSQSAQMRKRVAQYMRPSPCPLCQGKRLKRDALGVTF
AGLDIAELSHLPLQALAEVLRKVAAADYLTLQQDELTLEKRLAAQRIANELLERIDTLLG
LGLGYLALERSTPTLSSGELQRLRLATQLNSQLFGVIYVLDEPSAGLHPADSEALFEALQ
RLKHAGNSVYVVEHDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVEQSCTRAYL
FSAPPQTKRAPRQPCDWLKLEGITRNNLDNLSAAFPLGCFTAVTGVSGSGKSSLVSQALL
ELVGAHLGHAEQRGEPEEHSLEDEPDQASSGQVSAGLGSIKRLVQVDQKPIGRTPRSNLA
TYTGLFDHVRKLFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAP
CPTCHGARYNPETLAVSWQGMNIAQVLQMTVDQALQVFAEQPPVRRCLQVLQDIGLGYLR
LGQPATELSGGEAQRIKLATELQRIARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVEGG
HSVVVVEHDMRVVAQSDWVIDIGPGAGDAGGKVVVNGIPQVVAGCSESRTAAFLAKAL
NT seq 2517 nt   +upstreamnt  +downstreamnt
atgccgccacgctcaccctctcccaccggtttcgtccgcgtccgtggcgcccgcgagcac
aacctgaagaacatcgatgtcgatatccctcgcgacgccttggtggtgtttaccggcgtg
tccggttcgggcaagtcatcgctggccttctccacgctttatgccgaggcccagcgccgc
tatttcgaatcggtagcgccctatgcccggcgcctgatcgaccaggttggcgtgcccgac
gtggatgccatcgacggcctgccgccggcagtggccctgcaacagcaacgtggtacgcca
agtgcccgctcttcggtgggcagcgtcaccaccctgtccagctcgatccgcatgctctac
tcgcgcgcgggccactacccggccgggcaagcaatgctgtacgccgaggacttttcaccg
aacacacctcagggcgcctgcccggagtgccacggcatgggccgggtttaccaagtgacc
gaagcgaccatggtccccgacccgtcgctgactatccgcgagcgggcggtggccgcgtgg
ccgatggcctggcaggggcagaaccagcgcgacatcctggtgacgctgggctatgacgtg
gacattccctggcgcgacctgccccaggcgcaacgcgactggatcctgttcaccgaagaa
acgcctaccgcgcccgtgtatgccggcttgaccccagcgcagacccgcgacgcactcaag
cgcaaactggagcccagctaccaaggcacgttcatgggtgcacggcgttacgtgctgcat
acgttcatgcactcgcaaagcgcgcagatgcgcaagcgcgtggctcagtacatgcgcccc
agcccctgcccgctgtgccagggcaagcgcctgaagcgcgacgcgctgggcgtgaccttc
gccggcctggacatcgccgagctgtcgcacctgccgttgcaggcgctggccgaagtgttg
cgcaaggtggcggcggcagactacctgacactgcagcaggatgagctgacgctggaaaag
cgcctggccgcccaacgcatcgccaacgaactgctggagcgtatcgacacattgctcggc
ctgggccttggttacctggcacttgagcgcagcaccccgacgttgtcctccggcgagctg
caacgcctgcgcctggctacccagctgaattcacagttgttcggcgtgatctacgtgctc
gacgagccatcggccggtttgcacccagccgacagcgaagcgctgttcgaagccttgcaa
cgcctgaagcatgcaggcaactcggtgtatgtggtggagcacgacctggataccatgcgc
cgcgccgactggctggtggatgtagggccggctgccggcgagcatggcggtaccattctt
tacagcgggccgcctgcgggcctggccgaggtcgagcagtcatgcacccgtgcctacctg
ttcagcgccccgccccagaccaaacgcgccccccgtcagccctgcgactggctgaagctt
gaaggcatcacgcgcaacaacctcgataacctcagcgctgccttcccgctgggctgcttc
accgccgttaccggtgtttccggttctggcaagtccagcctggtcagccaggccctgctg
gaactggtaggggcacacctgggtcatgccgagcaacgtggcgagcccgaagaacacagc
ctggaagacgaacctgatcaggccagtagcggccaggtgagtgcggggcttggcagcatc
aagcgcctggtgcaggtcgaccagaagccaatcggccgcacaccgcgctccaacctggcc
acctataccggcctgttcgaccatgtacgcaagctgttcgccgccaccgagcaggccaag
gcgcagggtttcgacgctgggcgtttttctttcaacgttgccaagggccgctgcgccaac
tgcgagggtgaaggtttcgtcagcgtcgagttgctgttcatgcccagtgtctacgcgccc
tgcccaacctgccatggcgcccgctacaaccccgaaaccctggcggtgagttggcaaggc
atgaacatcgcgcaagtgctgcagatgaccgtcgaccaagccctgcaggtatttgccgaa
cagccaccggtgcgacgttgcctgcaagtgctgcaggatatcggcctgggctacctgcgc
ctgggccaaccggccaccgagctgtccggtggcgaggcgcagcggatcaagctggctacc
gaactgcaacgcatcgcccgcggggcaacgctgtatgtgctggatgagcccaccaacggt
ttgcacccgcaggacatcgaccggctgctggtgcagttgaaccgcctggtcgagggcggg
cacagcgtggtagtggtcgagcacgacatgcgtgtggtggcgcaaagcgactgggtgatc
gatattgggccgggagctggcgatgccgggggcaaggtggtggtcaacggcatcccgcaa
gtcgtggctggctgtagcgaaagccgtacagcggcgtttctggccaaagccttgtag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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