KEGG   Pseudomonas putida GB-1: PputGB1_4554
Entry
PputGB1_4554      CDS       T00650                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:3.6.4.13]
Organism
ppg  Pseudomonas putida GB-1
Pathway
ppg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PputGB1_4554
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppg03019]
    PputGB1_4554
Messenger RNA biogenesis [BR:ppg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PputGB1_4554
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25
Other DBs
NCBI-ProteinID: ABZ00441
UniProt: B0KGP5
Position
5089179..5090648
AA seq 489 aa
MLKALKKIFGKGDAAPQAVAPAASVTPPAPTPASEPRPAAKPAAPRANPTPKAERPAAVT
PAPAAEKPAKDKPRRERKPKPQASLWKPEDFVVEPQEGKTRFHDFKLSNELMHAIHDLGF
PYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALI
IAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDF
NQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNL
AKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDE
VRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHV
INFTLPEDPDDYVHRIGRTGRAGSSGVSISFAGEDDSYQLPAIEELLGRKIKCEMPPDEL
LKPVPRKHH
NT seq 1470 nt   +upstreamnt  +downstreamnt
gtgctcaaggcactcaagaaaatattcggcaagggagacgccgcgccacaggccgtcgct
cctgctgccagcgtgacgccaccggcgcccacgcccgccagcgagccccggcccgcagcc
aaaccggccgccccgcgcgccaaccccacccccaaggctgagcggcctgccgccgttacg
ccagcgccagcagccgagaagccggccaaggacaaaccgcgtcgcgagcgcaagcccaaa
ccgcaggccagcctatggaagcccgaagacttcgtggtcgagccgcaggaaggcaaaacc
cgtttccacgacttcaagctgtccaacgagctgatgcacgccatccacgacctgggcttc
ccatactgcacgccgattcaggcgcaggtactgggttacaccctgcgtggccaggacgcc
atcggccgggcccagaccggtaccggcaagaccgccgcattcctgatctcgatcatttcc
cagttgcagcaaacgcccccgcccaaggaacgctacatgggcgaaccgcgcgcgctgatc
atcgcccctacccgcgagctggtggtgcagatcgccaaggacgccgcggccctgaccaag
tacaccggcctgaacgtgatgagcttcgtcggtggcatggacttcgacaagcagctcaag
gccctggaagcgcgccactgcgatatcctggtggccaccccgggccgcctgctggacttc
aatcagcgcggcgaggtgcacctggacatggtcgaggtgatggtgctggacgaagccgac
cgcatgctcgacatgggcttcatcccccaggttcgccagatcattcgccagacgccgccg
aagagcgagcgccagaccctgctgttctccgccaccttcaccgacgacgtgatgaacctg
gccaagcagtggaccaccaacccggccatcgtcgagatcgaaccggaaaacgtcgccagc
gaaacggtcgagcagcatgtgtatgccgtggccggcagcgacaagtacaagctgctgtac
aacctggtgacccagaacaagtgggaacgggtaatggtgttcgccaaccgcaaggacgaa
gtgcggcgtatcgaagaaaagctggtgcgtgacggcatcaatgccgcccagctgtcgggc
gacgtgccgcaacacaagcgcatccgtaccctggagagcttccgtgaagggcgcatcacc
gtgctggtggcgaccgacgtggcggggcgtggtattcacatcgatggtatcagccatgtg
atcaacttcaccctgccggaagacccggacgactacgtgcaccgcattggccgaactggc
cgtgcggggagcagtggtgtgtcgatcagctttgccggtgaggatgattcctaccagttg
ccggcgatcgaagaactgctggggcgcaagatcaagtgtgaaatgccgccggatgagctg
ttgaagccggtgccgcgcaagcaccactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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