KEGG   Pannonibacter phragmitetus: APZ00_06245
Entry
APZ00_06245       CDS       T04214                                 
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
pphr  Pannonibacter phragmitetus
Pathway
pphr03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pphr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    APZ00_06245
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pphr03400]
    APZ00_06245
Enzymes [BR:pphr01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     APZ00_06245
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     APZ00_06245
DNA repair and recombination proteins [BR:pphr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     APZ00_06245
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS
Other DBs
NCBI-ProteinID: ALV26731
UniProt: A0A0U3N683
Position
complement(1330071..1330976)
AA seq 301 aa
MPELPEVETVRRGLQPDFEGARILKLECRRPDLRFPFPERFVERLEGRIVTALSRRAKYL
LADLDSGEVLVMHLGMSGSFRVEQQADSFLPGDFTHARSRDEKHDHVVFHLSAPGSQGPE
AASRIVYNDPRRFGFMQLVARSGLSSHPLFAAMGIEPLGNALNADLLDRLFAGKSAPLKA
ALLDQRLIAGLGNIYVCEALWRSGLSPERAAGDITGPGKARVAARERLAAAIRKVLEEAI
AAGGSTLRDHAQTDGTLGYFQHSFAVYGREGEPCRTEGCKGTVLRLVQSGRSTFHCAKCQ
R
NT seq 906 nt   +upstreamnt  +downstreamnt
atgcccgaattgcccgaggtcgagacggtcaggcgcggcctgcagccggattttgaaggc
gcgcgcatcctgaaactcgaatgccgccgcccggatctgcgctttcccttccccgagcgc
ttcgtggagcggctggaggggcggattgtcacagccctttcccgccgggcgaaatatctg
ctggccgatctcgacagcggcgaggtgctggtcatgcatctgggcatgtccggctccttc
cgggtggaacagcaggcggacagttttctgccgggtgatttcacccatgcccgctcgcgt
gatgaaaagcacgatcatgtggtgttccacctctccgcccccggcagtcagggaccggaa
gcggcaagccggattgtctataatgacccgcgccgtttcggtttcatgcagctggtggcg
cgcagcggcctcagctcccatccgctcttcgccgccatgggcatcgagccgcttggcaat
gcgctcaacgcggatctgctcgaccggctgtttgcgggcaagtccgcgccattgaaggca
gcgcttctggatcagcggctgattgccgggcttggcaatatctatgtctgcgaggcgctg
tggcgctccggcctcagtccggagcgggctgcgggtgacataacggggccgggcaaggcg
cgggtggccgcgcgcgagcggctggcggcagcgatccgcaaagtgctggaagaggcgatt
gccgccggcggctccaccctgcgcgaccatgcgcagaccgacggcacgctcggctatttc
cagcacagctttgccgtctatggccgcgagggcgagccctgccgcacggaaggctgcaag
ggtacggttctgcggctggtgcagtcgggccggtccaccttccactgcgcgaagtgccag
cgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (23)   

Download RDF
DBGET integrated database retrieval system