KEGG   Pseudomonas putida ND6: YSA_08650
Entry
YSA_08650         CDS       T02170                                 
Name
(GenBank) excinuclease ABC subunit C
  KO
K03703  excinuclease ABC subunit C
Organism
ppi  Pseudomonas putida ND6
Pathway
ppi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ppi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    YSA_08650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppi03400]
    YSA_08650
DNA repair and recombination proteins [BR:ppi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     YSA_08650
SSDB
Motif
Pfam: UvrC_RNaseH_dom HHH_5 HHH UVR GIY-YIG HHH_2 HHH_3 DUF3780 lpg1496_N 5_3_exonuc
Other DBs
NCBI-ProteinID: AFK71446
UniProt: I3V125
Position
4704782..4706605
AA seq 607 aa
MSQVFDASAFLATCSGRPGVYRMFDGEARLLYVGKAKNLKKRLASYFRKAGLAPKTAALV
ARIAQVETTITANETEALLLEQNLIKEWRPPYNILLRDDKSYPYVFLSDGEFPRLGIHRG
AKKAKGRYFGPYPSAGAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCTD
LVTAEEYAEDVRHSVMFLEGRSQQLGNELNAEMEKAAMALDFEKAAELRDQIALLRRVQD
QQYIEGGSGDVDVIAAFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLS
QYYLGNAERELPGELIVNVVHEDFNAITEALHTLRGRELTISHRVRGTRARWQQLAVTNA
EQALNARLANRQHMAARFEALAEVLGLDEVPQRLECYDISHSSGEATVASCVVFGPEGPI
KSDYRRFNIEGVTAGDDYAAMHQALTRRYGRIKDGEGKLPDVLLVDGGKGQLNMARDVMQ
ALGFTDLTLLGVAKGVTRKAGFETLYLNDVHHEFTLKGDSSALHLIQQIRDEAHRFAITG
HRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAESI
YASLHSE
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgtcccaagtctttgatgccagcgcattcctggcgacctgcagcggtcgcccgggcgtt
taccggatgttcgacggcgaagcccggctactttacgtgggcaaggccaagaacctgaag
aagcgcctggccagctatttccgcaaggctggccttgcgcccaagaccgccgcgctggtt
gcgcgcatcgcccaggttgaaaccaccatcaccgccaacgaaaccgaggcgttgctgctg
gagcagaacctgatcaaggagtggcggccgccttacaacatcctgctgcgcgacgataag
tcctacccctacgtgtttctgtccgatggcgagttcccgcgcctgggcattcaccgtggg
gcgaaaaaggccaagggccgttactttggcccgtaccccagcgccggggccattcgcgaa
agcctcagcctgctgcaaaaggccttttctgtgcgtcagtgcgaagacagctactacgcc
aaccgcacccggccatgcctgcagtaccagataaagcgctgcaaagggccctgcaccgac
ctggtgactgccgaggaatacgcagaggacgtgcgccattcggtgatgtttctggaaggg
cgtagccagcaactgggcaatgagttgaacgccgagatggagaaggccgccatggccctc
gatttcgaaaaagccgccgagctgcgtgaccagatcgccttgttgcgccgcgtgcaggac
cagcagtacatcgagggcggcagcggcgatgtcgacgtcatcgccgccttcgtcaacccg
ggtggtgcctgtgtgcacctgatcagcgtgcgcggcgggcgagtactgggcagcaagaac
ttcttcccgcaggtgggcatcgaggaggaggtggctgaggtcatggccgcgttcctgtcc
cagtactatctgggcaacgcagagcgcgagctgcccggcgagttgattgtcaacgttgtt
cacgaagacttcaacgccatcaccgaagcgctgcacacgctgcgtggccgcgaactgacc
atcagccaccgggtgcgtggcacccgcgcccgctggcagcaactggccgtgaccaatgcc
gagcaggcgctgaatgcccgcctggccaaccgtcagcacatggctgcgcgcttcgaagcc
ctggccgaagtgctgggcctggatgaagtgccgcaacgcctggaatgctacgacatcagc
cactccagtggtgaagctaccgtggccagttgcgtggtgttcggccccgaagggccgatc
aagtccgactaccgccgcttcaatatcgaaggcgtcaccgcaggtgacgattacgcggcc
atgcatcaggccctgacccgccgctatgggcgcatcaaggacggcgagggcaagctgccc
gacgtgctgctggtggacggcggcaaaggccaactgaacatggcccgcgatgtgatgcag
gcgctgggcttcaccgacctgaccctgctgggggtggccaagggcgttacacgcaaggcg
ggtttcgaaaccctgtacctgaacgatgtgcatcacgaattcaccctcaagggcgattca
tcggcgttgcacctgatccaacagatccgcgacgaagcccaccgcttcgctatcaccggc
caccgcgcccgccgtggcaaggcccgtcgagtctccagccttgaagatgtggccggggta
gggcccaagcgccgccgcgacctgctgaaacatttcggcggcctgcaggagctcaaccgc
gccagtatcgatgaaatcgccaaagcccccggcatcagtaaaaagcttgccgagtcgatt
tatgccagcctgcatagcgagtag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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