KEGG   Pseudomonas plecoglossicida: RK21_05557
Entry
RK21_05557        CDS       T03646                                 
Name
(GenBank) NAD-dependent DNA ligase LigB
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ppj  Pseudomonas plecoglossicida
Pathway
ppj03030  DNA replication
ppj03410  Base excision repair
ppj03420  Nucleotide excision repair
ppj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RK21_05557
   03410 Base excision repair
    RK21_05557
   03420 Nucleotide excision repair
    RK21_05557
   03430 Mismatch repair
    RK21_05557
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppj03032]
    RK21_05557
   03400 DNA repair and recombination proteins [BR:ppj03400]
    RK21_05557
Enzymes [BR:ppj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     RK21_05557
DNA replication proteins [BR:ppj03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     RK21_05557
DNA repair and recombination proteins [BR:ppj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     RK21_05557
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RK21_05557
   MMR (mismatch excision repair)
    DNA ligase
     RK21_05557
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RK21_05557
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_5 RNA_ligase ORF_2_N DUF3701
Other DBs
NCBI-ProteinID: AJG17065
UniProt: A0A099N6P6
Position
complement(5856704..5858404)
AA seq 566 aa
MPLMLLFALLLTLNAPLARAATCPTWNPQQVEAEVSRLRATLARWDDHYHRQGIALVADE
LYDQSRQHLAHLQQCFGITTTPSPLASAGGPIPHPVPHTGVDKLADLQAVERWLAGKADV
WVQPKVDGVAVSLIYRQGRLVQLISRGDGVQGHDWSRHIPLLVEINRQLPQAIDLQLQGE
LYLRLDAHVQARAGSANARGTVAGLLARKQLGREQGERIGLFVWDWPQGPEQQAERLAKL
AELGFAHSQDYSVAIETADDAAHWREYWYRSPLPFATDGVVLRQGVRPPSERWQAKAPYW
IAAWKHPYTQALAEVREVRFRVGRTGRVTPVLHVLPVTLDDRRITQVSLGSLARWRKLDI
RPGDQVAVSLAGLTIPRLEQVVHRAAERQPVIAPAPGQHHAHSCWQISEGCEDQFIARLT
WLSGKQGLALPRTGPGTWRRLVAAGLVTSMTDWLHLDAERLAQVAGISDTTAAQLLGSFD
QARSRPFAQWLRGLGAPTPTRMQVTGDWLELAARTSLEWQAMPGIGEKRGEQLAGFFATT
EVQAIATQLATAGIDGFRIDRQSIEQ
NT seq 1701 nt   +upstreamnt  +downstreamnt
atgccgctcatgctgcttttcgccctactgttgacgttgaatgctcccctggcccgtgcc
gccacatgtcccacctggaacccgcaacaagtcgaggctgaagtgagccgactgcgcgcc
acgcttgcccgctgggacgaccattatcatcgtcagggcatcgcattggtggctgatgaa
ctatacgaccagagccgccagcacctggcgcacctgcagcaatgctttggcatcacgact
accccgtccccgctggccagcgctggcgggccaattccgcatccggtgccgcacaccggc
gtcgacaagctggccgaccttcaggctgtagaacgctggctggccggcaaggcagatgta
tgggtgcaaccaaaggtcgatggcgtagcggtctccctcatctaccgtcagggccggctg
gtgcagttgatcagccggggggacggcgtgcaggggcacgactggagccgccacatcccc
ctgctcgtcgaaatcaatcggcagctgccccaggccattgacctgcaactgcagggcgaa
ctgtacctgcgcctggacgcgcatgtgcaagcccgggcaggcagcgccaacgcccgaggg
acagtagccgggctgctggctcgcaagcagctgggtcgtgagcaaggtgagcgcatcggc
ctgttcgtgtgggactggccgcagggccccgagcagcaggccgaacgcctcgcgaagctg
gcggaactgggttttgcgcacagccaggattacagcgtcgccatagaaacagcagacgat
gcagcgcactggcgcgagtactggtaccgctcacccctgcccttcgccaccgatggcgtt
gtgttgcgccaaggcgtccggcctccgtccgagcgctggcaggccaaggcgccctactgg
atcgcggcgtggaagcacccgtacacgcaagccttggccgaagtgcgcgaagtacgcttc
cgcgtcggccgtaccggcagggttacgccagtcttgcatgtactgccggttaccctggat
gaccggcgaatcacccaggtgagcctgggatcgctggcacgttggcgcaagctcgacatc
cgccccggtgaccaggtggccgtcagccttgccgggctgaccatcccacgcctggagcaa
gtggtgcaccgcgccgccgagcgccaaccggtgatcgcaccagcgcccggccagcatcat
gcccacagttgctggcagatcagcgaaggctgcgaggaccagttcattgcccgcctcacc
tggctcagcggcaagcaggggctggccctgccgcgcaccggccctggtacctggcgccga
ctggtggctgccgggctggtgacctcgatgaccgactggctgcatctggatgccgagcgc
ctggcccaggtagcgggtatcagtgacacaacggctgcgcagttgctgggcagtttcgac
caagctcgctcacggccctttgcccaatggctgcgcgggcttggcgcgcctacacccacc
aggatgcaggtaacaggcgactggctggagctggctgcccgcacgagtcttgaatggcaa
gccatgcccggtatcggcgaaaagcgcggagaacagcttgctggtttttttgcaaccacc
gaggttcaagccattgcaacgcaactggcgacggcagggatcgacggattccggatcgac
aggcaaagcatcgagcaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (26)   

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