KEGG   Pandoraea pnomenusa 3kgm: U875_07965
Entry
U875_07965        CDS       T02936                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
ppk  Pandoraea pnomenusa 3kgm
Pathway
ppk03030  DNA replication
ppk03410  Base excision repair
ppk03420  Nucleotide excision repair
ppk03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    U875_07965
   03410 Base excision repair
    U875_07965
   03420 Nucleotide excision repair
    U875_07965
   03440 Homologous recombination
    U875_07965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppk03032]
    U875_07965
   03400 DNA repair and recombination proteins [BR:ppk03400]
    U875_07965
Enzymes [BR:ppk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     U875_07965
DNA replication proteins [BR:ppk03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     U875_07965
DNA repair and recombination proteins [BR:ppk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     U875_07965
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     U875_07965
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc
Other DBs
NCBI-ProteinID: AHB05336
Position
1734653..1737391
AA seq 912 aa
MSEQQSLEGKTLLLVDGSSYLYRAYHALPDLRGPNGEPTGALHGIVNMLRRMRKDVHAEY
SACVFDAKGKTFRDDWYPEYKAHRPAMPDDLRAQIEPIHEAVRAMGWPLLMIDGVEADDV
IGTLARQAVARGMRVVVSTGDKDLAQLVNENVTLVNTMTNETLDIAAVTAKFGVPPERIV
DYLTLVGDTVDNVPGVEKCGPKTAVKWLTQYGDLDNLVANAEQVKGAVGENLRRALDWLP
MGRKLVTVAVDCDLAPQVTSIEASLQTQPEDAETLRDFFARHGFKTLLREAQTAVAVQAG
EAAPAPVADTIERAYDAVLTWAQFDAWLKIIEAAELTAFDTETTSLDAMQAQLVGLSFSC
EPGRAAYIPVAHRAPGEVEQLPRDEVLARLKHWLESPDHKKVGQNLKYDAHVLENYGIEL
GGIAHDTLLESYVLESHRNHDMDSLASRHLGVTTVKYEDVCGKGAKQIGFDEVSVERATE
YAAEDADITLRLHRALYPDVAREATLEFVYANIEMPTARVLQRMERNGVLVDTARLAAQS
DEIGRKLIALEAEAFTLAGQQFNLNSPKQIGDIFFTQLQLPVVKKTASGAPSTDEEVLQK
LAEDYPLPKVLLEYRGLAKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAITGRLASNDPNL
QNIPVRTPEGRRIREAFVAPPGSQLVSADYSQIELRIMAHISGDESLLRAFANGEDIHRA
TAAEIFAVTPLEVSSEQRRYAKVINFGLIYGMSAFGLAANLGIERDAAKQYIDRYFMRYP
GVARYMDETRKSAKARGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQGTAADFI
KLSMIAVQRWLDDSGMQTRQIMQVHDELVLEVPDHELAEVRKRLPELMCGVAKLRVPLVA
EVGVGENWEQAH
NT seq 2739 nt   +upstreamnt  +downstreamnt
atgtcggaacagcaaagtctggaaggtaagacgctcttattggtcgatggttcgagttat
ctgtatcgagcctatcacgccctgccggatttgcgcggccccaacggtgaacccaccggg
gcccttcacggcatcgtcaacatgctgcgccgcatgcgtaaagacgtacacgcagagtat
agcgcctgcgttttcgacgccaagggcaaaacgtttcgcgacgattggtaccccgaatac
aaggcgcatcgaccggcgatgcccgacgatctgcgtgcgcagatcgagcccattcacgag
gccgtgcgcgccatgggctggccgctgctgatgatcgacggcgtggaagccgatgacgtc
atcggcaccctggccaggcaggccgtcgcgcgcggcatgcgcgtggtcgtctcgaccggc
gacaaggatctggcgcagctcgtcaacgagaacgtgacgctcgtgaacacgatgaccaac
gagacgctggacatcgccgccgtgaccgcgaagttcggcgtgccgcccgagcgcatcgtc
gactacctgaccctcgtgggcgataccgtggacaacgtgccgggggtcgagaagtgcggc
cccaagacggccgtcaaatggctcacgcagtacggcgatctcgacaacctcgtggccaat
gcggagcaggtcaagggcgcggtcggcgagaacttgcgccgcgcgctggactggctgccg
atgggccgcaagctcgtgacggtcgcggtcgattgcgatctcgcccctcaggtcacctcc
atcgaagccagcctccagacccagcccgaagatgccgagacgttgcgcgacttcttcgcg
cgccacggcttcaagacattgctgcgtgaagcgcagaccgcggtagcggtccaggccggc
gaggcggcaccggcgccggtggccgacaccatcgaacgagcatacgacgccgtgctcacg
tgggcgcagttcgacgcgtggctcaagatcatcgaggccgccgaactcacggcattcgac
accgagacgacgtcgctcgacgcgatgcaggcgcagctcgtcggcctgtcgttctcatgc
gagccgggacgcgcagcatacattcccgttgcccaccgcgcgccgggcgaagtcgagcaa
ttgccgcgcgatgaagtgctcgcgcgcctgaagcactggctggaaagtccggaccacaag
aaggtcgggcagaacctgaagtatgacgcgcacgtgctggagaattacggcatcgagttg
ggcggtatcgcccacgacacgctgctcgagtcgtacgtgctcgagtcgcatcgcaatcac
gacatggacagcctcgcgtcgcgccatctgggtgtgacgacggtgaagtacgaggacgtg
tgcggcaagggcgccaagcagatcgggttcgacgaagtgagtgtcgagcgcgcgaccgag
tacgccgccgaggacgccgacatcacgctgcgcctgcatcgcgcgctctaccccgatgtc
gcgcgcgaggccacgctcgaattcgtctacgccaatatcgagatgcccaccgcgcgcgtg
ctccagcgcatggagcgcaacggcgtgctcgtcgatacggcgcgcctggccgcgcagagc
gacgaaatcggccgcaagctcatcgcgctcgaagccgaggcgttcacgctcgccgggcag
cagttcaatctgaactcgcccaagcagatcggcgacatcttcttcacgcagttgcagttg
cccgtcgtgaagaagacggcgagcggcgcgccgtcgaccgacgaagaggtgcttcagaag
ctggccgaggattacccgctgccgaaggtgctgctcgagtatcgaggtctggccaagctc
aagtcgacgtatacggacaagctgccgaggatggtcaatccgtcgactggccgggtccac
acgaactacgcgcaagccgtggcgatcaccgggcgtctggcatcgaacgatccgaacctg
cagaacattccggtgcgcacccccgagggccggcgcattcgcgaggcattcgtggcgcct
ccgggcagtcaactggtttcggccgactactcgcagatcgagctgcgcatcatggcgcac
atctcgggcgacgaaagcctgctgcgcgcgttcgccaacggcgaagacattcaccgtgcc
accgcggccgagatcttcgccgtcacgccgctggaggtatcttccgagcagcgccgctac
gccaaggtcatcaacttcggtctgatctacggcatgagcgcgtttggactggcggcgaac
ctcggtatcgagcgcgatgccgccaagcaatacatcgaccgctacttcatgcgatatccg
ggtgtggcgcgttacatggacgagacacgcaagagcgccaaggcgcgcggctacgtggag
acggtcttcgggcgccgcctgtggctgccggacatcaacggtggcaacggcccgcgccgt
caggcggccgagcgcgctgccatcaatgcgcccatgcagggaacggccgccgacttcatc
aagctgtcgatgatcgccgtgcagcgctggctggacgacagcggcatgcagacgcgtcag
atcatgcaggtgcacgacgaactggtgctcgaggtgcccgatcacgaattggcggaagtt
cgcaagcgcttgccggagctgatgtgtggcgtggcgaagctgcgcgtgccgctcgtggcc
gaagtcggcgtgggcgagaactgggagcaggcgcactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (33)   

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