KEGG   Planococcus plakortidis: BBI15_08275
Entry
BBI15_08275       CDS       T04812                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ppla  Planococcus plakortidis
Pathway
ppla03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBI15_08275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppla03021]
    BBI15_08275
   03019 Messenger RNA biogenesis [BR:ppla03019]
    BBI15_08275
Transcription machinery [BR:ppla03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BBI15_08275
Messenger RNA biogenesis [BR:ppla03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BBI15_08275
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB ATPase_2 AAA_25 AAA_22 NACHT AAA Spore_III_AA DUF6417
Other DBs
NCBI-ProteinID: ANU20211
UniProt: A0A1C7E941
Position
complement(2553859..2555142)
AA seq 427 aa
MATMTISALENMTLKELYNLAKEYKLNNYSKLTKKELIFAILKTRAEQEGFFFMEGVLEI
IQSEGFGFLRPINYSPSSQDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEA
VNGEDPEVAKERVHFPGLTPLYPDRHIRLETGPEHLSTRIMDLVSPVGFGQRGLIVAPPK
AGKTMLLKEIANAVTTNHPEAELIVLLIDERPEEVTDIERSVDADVVSSTFDEVPENHVK
VAELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVDTGSRMDEVIYEEFKGTGNMELHLDRSLAERRIFPALDIR
RSGTRKEELLMAPEQLDKLWTIRKTFSDSPDFTERFMKKLGNSKTNEEFFSQLPRDGKPS
RTPRKSI
NT seq 1284 nt   +upstreamnt  +downstreamnt
atggcaacgatgacaatctctgcattggaaaatatgacgctcaaagagctttataacctg
gcaaaagaatacaagctgaacaattacagcaaactgacgaaaaaagaattgattttcgcc
attctgaaaacccgtgcggaacaagaaggcttctttttcatggaaggcgtcctagaaatc
atccaatcggaaggctttgggttcctgcgcccgatcaattattccccaagttcccaggac
atctatatttccgcttcccagatccgccggttcgacctcagaaacggcgataaagtatcg
gggaaagtccgaccgccaaaagagaatgagcgctatttcgggctgctccaagtagaagcc
gtcaatggcgaagacccggaagtcgcaaaagaacgcgtccattttccaggcttgacgcca
ctgtatccggatcgccacatccgcctggaaacggggccggaacatttatcgacacgcatc
atggatctcgtatccccggtcggctttggccagcgcggcttgattgttgcaccgccaaaa
gccggaaaaacgatgttgctaaaggaaattgccaatgcggtaacgacgaaccatccggaa
gcggaactgattgtgctattgatcgatgagcggccggaagaagtgacggatatcgaacgc
tcggtcgacgccgatgtagtgtcttcgactttcgatgaagttcctgaaaaccatgtcaaa
gtggccgaattggttctcgaacgcgccatgcgccttgtcgaacataaacgcgatgtcgtc
atcttgatggattcgatcactcggctggcgcgtgcttataatctagtcattccaccgagc
ggccgcacgctgtccggcgggattgaccctgccgcattccaccgcccgaaacgctttttc
ggtgccgcacgcaatattgaagaaggcggcagcttgacgattcttgcgacagcacttgtc
gacacgggatcgcgcatggatgaagtcatctatgaagagttcaaaggaaccggcaatatg
gagctgcatctcgaccgcagcttagccgagcgccgcattttcccggcgctcgacatccgc
cgctcgggcacgcgcaaggaagaattgttgatggctccggaacaacttgataaactatgg
acaatccgcaaaaccttttcggattcccctgacttcacggaacgtttcatgaagaagctc
ggcaactcgaagaccaacgaagagttcttcagccaattgccgagagatgggaaaccatcg
cgcaccccgcgaaagtcgatttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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