KEGG T01968: PPM

Paenibacillus polymyxa M1: PPM_0006

Entry

PPM_0006          CDS       T01968

Symbol

gyrB1

Name

(GenBank) DNA gyrase subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

ppo Paenibacillus polymyxa M1

Brite

KEGG Orthology (KO) [BR:ppo00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppo03032]
    PPM_0006 (gyrB1)
   03400 DNA repair and recombination proteins [BR:ppo03400]
    PPM_0006 (gyrB1)
Enzymes [BR:ppo01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     PPM_0006 (gyrB1)
DNA replication proteins [BR:ppo03032]
Prokaryotic type
  DNA Topoisomerases
   PPM_0006 (gyrB1)
DNA repair and recombination proteins [BR:ppo03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      PPM_0006 (gyrB1)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3 HVO_2248

Other DBs

NCBI-ProteinID:

CCC82943

Position

4402..6312

AA seq 636 aa
MSMNQPSYDAGEIQVLEGLEAVRKRPGMYIGSTSVKGLHHLVWEVVDNSIDEALAGYCNS
IQVVVHKDNSITVTDNGRGIPVSEHAKMKKSALEVVMTVLHAGGKFGGGGYKVSGGLHGV
GVSVVNALSSKMIVHVKRDGHVYEQEYHRGAPQYDVRVIGDTEETGTQTTFYPDEQIFTE
TTVYDYDTLQTRIRELAFLNKGIAISLTDERTGASDTFHYEGGISEYVQFLNQKREALHE
QPIYVEGSRDMIQVEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYAR
KNGLIKDNNANLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQ
EFLEENPSVSRRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSSKDASIS
ELYIVEGDSAGGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVTAMGTGI
GDDFDITKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQPPLFKVER
NKVVRYANSEAERDEIIKEFGENAKYNVQRYKGLGEMNATQLWETTMDPESRTMLQVTVS
DAMLADTLFNTLMGDNVEPRRDFIQEHAKYVKNLDF

NT seq 1911 nt +upstreamnt +downstreamnt
atgtctatgaatcaaccgtcttatgatgcgggcgagattcaggtcctcgaaggcctggaa
gcggttcggaaacgtcccgggatgtatattggctccacgagcgtcaaggggctccatcat
ctggtctgggaagttgtggacaacagtattgacgaagcgctggcgggttattgtaacagc
attcaagttgtcgttcacaaagataatagcattaccgttacagataacggccgcggtatt
ccggtaagtgaacacgccaaaatgaaaaaatcagcgctggaagtcgtaatgaccgtactt
cacgcaggtggtaaattcggaggcggagggtacaaggtgtctggtggtctgcacggggtt
ggtgtatccgtggtgaacgctctctccagcaaaatgatcgttcatgtcaaacgggatgga
catgtatatgagcaggaataccatcgtggtgctccacagtatgatgtcagagtcatcggt
gatacagaagagacaggtacccaaacgaccttctatccggacgaacaaatctttaccgaa
acgaccgtatatgactatgatacgctgcagacgcggattcgtgagctggctttcctgaac
aagggcattgcaattagcttgaccgatgaacggacaggcgccagcgatacatttcactat
gagggtggaatcagtgaatatgtgcagtttctgaatcaaaaaagagaagcactgcatgaa
cagccgatttatgtcgaaggctctcgtgacatgattcaggtcgaagttgcattgcaatat
aacgacagctataccgagaatatttattcttttgccaacaatatcaacacccatgagggc
ggaactcatgaatcaggtttcaagagtgcattaacccggattattaacgattatgcacgc
aaaaatggcttgattaaggataacaacgccaatttgaccggtgacgatgtacgcgaaggt
ttgacagcgatcatctccgtcaaaatcccagaaccacagtttgagggtcagactaaaaca
aagctcggcaacagtgaagtgcgaggaattgtcgagtctctgttcgcagagaaactccag
gaattcctggaggaaaacccgtccgtctcccgccgtgtggttgataaatcattacaagca
gctcgagcccgggaagcagcgcgcaaagcgcgtgaacttacacgtcgcaaaagtgcgttg
gaaattagttcgctcccaggtaagctggcggattgctcctctaaggacgcttcgatcagt
gaattgtacatcgtcgaaggtgactcagcagggggatcggccaagcaggggcgtgatcgt
cactttcaagcgattttgccaattcgcggtaaaatcctgaatgttgaaaaggcacgcttg
gaccgtattttgtccagtgatgaaatacgttcgatggtaacagcaatgggtacagggatc
ggagatgattttgacatcaccaaagcccgttaccacaaggtcattatcatgacagatgcc
gatgtcgatggtgctcatattcgcacattgttgctgacgttcttctatcgctacatgcgc
aaaatcattgatgcgggctatatatacattgctcagccaccactattcaaagtcgagcgt
aacaaagttgttcgttatgcgaactctgaggcggaacgtgacgagatcattaaggaattt
ggagaaaatgcgaagtacaatgtacagcgttataaaggtttgggtgagatgaatgcgacc
caactttgggaaaccacgatggacccagagagccgtacaatgctgcaggtaactgtcagt
gacgcgatgctggctgatacgctgttcaataccttaatgggtgacaatgtagaacctcgc
cgcgactttatccaagaacatgcgaagtacgtgaaaaacctagatttctaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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