KEGG   Paenibacillus polymyxa CR1: X809_09235
Entry
X809_09235        CDS       T02956                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
ppol  Paenibacillus polymyxa CR1
Pathway
ppol03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppol00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    X809_09235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppol03019]
    X809_09235
   03009 Ribosome biogenesis [BR:ppol03009]
    X809_09235
Messenger RNA biogenesis [BR:ppol03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     X809_09235
Ribosome biogenesis [BR:ppol03009]
 Prokaryotic type
  rRNA helicases
   X809_09235
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Helicase_RecD CMS1 AAA_30 AAA_22 Flavi_DEAD GRP
Other DBs
NCBI-ProteinID: AHC19395
Position
1970575..1972164
AA seq 529 aa
MTTFAEFDLEPKVIQAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPL
INKISRSDEKIRALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKKK
PQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTML
FSATMPPNIKRLAEQFLKNPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLIDMESP
ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIERVTR
HRIPRKPLPTLAEALEGKQRIIAERLLEAVESGELNEYKGLAIQMLEQYDSVQLLSAALK
LMTGEKREASIELTPEDPIRAKRRKPDVRSGGRKPSNYSGRSNGGYNSNRSGGTGGSGSK
GGYGGYNRGKEGGGYNRDSGSRYSGDRKPRPSSNGETRRPARREDSSSE
NT seq 1590 nt   +upstreamnt  +downstreamnt
ttgacgacatttgcagaatttgatcttgaaccgaaagtaattcaggcgattacagaactg
ggttttgaagaagcaacaccaattcaatcccaatccatcccgattgcactgcaaggcaga
gacatgattggccaagcccaaacaggtactggtaaaactgctgcgtttggtattccgctg
atcaacaaaatttctagaagcgacgaaaaaatcagagccctgatcatggcaccaacacgt
gagcttgctatccaggtagctgaagaaatcgaaaaactctcccgtttcaaaggtcttcgt
actttgccaatctatggtggacaagatatcgtacgccagattcgtgctttgaaaaagaaa
cctcaaattattattggtacgccaggacgcttgcttgaccatattaatcgcaaaaccatc
aagctggaagatgtaaacacagttgttttggatgaagcagatgaaatgttggatatgggc
ttcatggaagatattcaatccattctgaagcaagttccagacgagcgccaaacgatgctt
ttctcggctacaatgcctcctaatattaaaagattggctgagcaattcctcaaaaatcct
gagcatgtttcagttattcctaaacaagttagtgctccactgattgatcaggcctatatc
gaagttcctgagcgtcaaaaattcgaagcattgagccgtttgatcgacatggaatcccca
gaacttgctatcgtatttgggcgtactaagcgtcgggtagacgagctggctgaagctctg
caaaaacgcggatattctgcagacggtttgcatggtgacttgtctcaaaaccaacgtgat
gctgtaatgcgtaaattccgtgacggaagcatcgatgtgctcgtagcgactgacgtagct
gcccgtggtttggacgtttccggcgtaactcacgttgtgaactttgaccttccgcaagat
ccagaaagctatgttcaccgtattggacgtactggacgtgcaggtaaagaaggggaagct
tggtctttcgtaacgcctcgtgaaattgaccatttgcactttatcgaacgtgtaactcgt
caccgcattccacgcaagccgcttccaacgttggctgaagctctggaaggcaaacaacgt
atcattgctgaacgtctcctagaggctgtagaaagcggtgagctgaacgagtacaaaggt
ttggctattcaaatgctggagcaatatgattctgtacaacttctctccgcagctctgaaa
ctgatgactggtgagaaaagagaagcatcgattgagttgactccagaagatccgatccgt
gcaaaacgtcgtaaaccagacgtgcgttctggcggtcgcaagccttccaactatagcggt
cgcagcaatggtggttacaattccaaccgttctggcggtaccggcggtagtggaagtaaa
ggtggatatggcggttacaaccgtggcaaagaaggcggtggctacaaccgtgattcagga
agccgctacagtggagatcgtaaaccacgcccgagcagcaatggagaaactcgtcgtcct
gcaagacgtgaagattcctcttccgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system