KEGG T02956: X809

Paenibacillus polymyxa CR1: X809_39235

Entry

X809_39235        CDS       T02956

Name

(GenBank) excinuclease ABC subunit A

K03701

excinuclease ABC subunit A

Organism

ppol Paenibacillus polymyxa CR1

Pathway

ppol03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:ppol00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    X809_39235
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppol03400]
    X809_39235
DNA repair and recombination proteins [BR:ppol03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     X809_39235
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      X809_39235

SSDB

Motif

Pfam:

UvrA_inter UvrA_DNA-bind ABC_tran SMC_N AAA_16 AAA_29 nSTAND1 RsgA_GTPase AAA_25 AAA_22 nSTAND3 AAA_21 AAA_33 DnaJ_CXXCXGXG NACHT AAA_24 cobW Viral_helicase1 ExoX-like_C

Other DBs

NCBI-ProteinID:

AIW41898

Position

complement(5344126..5346987)

AA seq 953 aa
MANESIIIKGARAHNLKNIDVTIPRDKFVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGHP
HCPEHGIEITSQTVEQMVDRILQYPEKTRLQILAPLVSGRKGEHKTLFTDIAKQGFVRVR
VNGELRELSEKIELEKNKKHSIEVVVDRIVVKEDVRARLSDSIETALNLSGGQLLVDIMG
QEELRFSSNFACPICGFSIDELSPRMFSFNSPFGACPDCDGLGVKMVVDPDLLIPDPEKS
VEDGAFQAWSGGTSTYYPQFLQSVCEHYGIPQDIPVSQLTTEQMNLILHGTGEQKIRFRY
ENDFGQRKEAYVTFEGIIPNLERRYRDTASEGIREFIEGFMSAKPCNTCKGHRLKKESLS
VTIQERNIAFVTALSIGEASNFFHTLELSEKEKSIANLILKEINSRLGFLVNVGLEYLTL
SRAAGTLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISALEHMRNLGNT
LIVVEHDEDTMMAADYIIDIGPGAGIHGGMIMSQGTPQEVMEDPNSLTGQYLSGRKFIPV
NTERRKPADKWLEIRGAKENNLKNVNVKIPLGVFSAVTGVSGSGKSTLVNEILYKTLARD
LNRARVRPGQHKEIRGLEHIEKVVEIDQSPIGRTPRSNPATYTGVFDDIRDLFSQTNEAK
VRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKG
KSIADVLEMTVEDATEFFVNIPKIHRKIQTLMDVGLGYIKLGQPATTLSGGEAQRVKLAS
ELYRRSTGKTIYILDEPTTGLHVHDIDRLLTVLHRLVDSGETVLVIEHNLDVIKTADYLI
DLGPEGGSGGGTILATGTPEQLVKVEESYTGRYLKPILERDTERSQALQTVDL

NT seq 2862 nt +upstreamnt +downstreamnt
ttggcgaatgaaagcatcatcatcaaaggcgcacgcgcgcataatctcaaaaatattgac
gtgacgattccacgggacaagttcgttgtcctgacagggcttagtggctcaggtaaatcg
tcactggctttcgatacgatctatgcggaagggcaacgtcggtatgtggaatctttatct
gcgtatgcccgtcaattcctcgggcaaatggagaaaccggacgttgattcgattgacggt
ctgtctcctgccatttccattgaccaaaaaacgacaagtcggaatccgcgttctaccgtc
ggaacggttaccgaaatctatgactacctgcggttgttgtttgcccgggtgggtcatcct
cattgtcctgaacatggcattgaaattacttcacagaccgttgaacagatggtggaccgc
attttgcagtatcctgaaaagacaagactgcagattctggctccattggtatccggccgc
aaaggtgagcataaaacactgttcactgatatagccaagcagggctttgtacgggtacgt
gtgaatggagaactacgtgaattgtctgagaagattgagctggaaaagaacaagaagcac
tcgattgaagtggtcgtagaccgcatcgtagtcaaggaagatgtgcgtgcgcgtctatcc
gactctattgagacggcactaaatctttcaggtgggcagttgcttgtagacattatgggg
caagaggagttgcggttcagctccaactttgcatgccctatttgtggattcagcatagat
gaactgtctccaagaatgttttcctttaatagtccgttcggcgcttgtccggattgtgat
gggttaggagttaaaatggtggttgaccctgatttgctcattcccgatcctgaaaaaagt
gtcgaggatggggcttttcaggcttggagtggtggaacttccacttattatcctcaattt
ttacagtcagtatgcgagcactacggtattccacaggacattcctgttagtcaattgacg
acagagcaaatgaacctcattttacatggaacgggagagcagaagatccgtttccgctat
gagaatgattttggtcaacgtaaggaagcctatgtgacctttgaggggattatccccaat
ctggagcgtcgttatcgtgatacggcttctgagggtatacgtgaatttattgaaggcttt
atgagtgcaaagccatgtaacacttgtaagggacaccgactgaaaaaagaaagcctgtcg
gtaaccattcaagagcgtaatatagcttttgtgacagctttgtctatcggtgaagcctca
aactttttccatacactggagctgagtgagaaggagaagtcgattgccaatctcatttta
aaagaaattaacagccgcctgggattcctcgttaacgttggtctggaatacctgacttta
agccgtgcggcaggcacgttgtcaggcggtgaggcacagcgtatccgactggcgacacag
atcgggtccagcctgatgggtgtgctttatattttggacgagcctagtataggattgcat
cagcgagataatgaccgtctgattagtgctttggagcatatgcggaatctcggtaatacg
ttgattgtggtggaacatgacgaagatacgatgatggcggcggactatatcattgatatc
gggccaggagctggaatccatggtgggatgatcatgtcgcaggggactccgcaggaagtc
atggaagacccgaattccttaaccgggcagtatttgagtggacgcaagttcattccggtc
aataccgagcggcgcaagcctgctgataaatggttggagattcgcggagccaaggagaac
aatctcaaaaatgtgaatgtcaaaattccattgggtgttttctcagctgttactggtgta
tctggttctggaaaatcgacgctggtcaatgaaattttgtacaaaacgttggcgcgtgat
ctgaaccgtgcgagagtacgtccagggcagcataaagaaattcgcggactagaacatatc
gaaaaggttgttgagatcgatcaatcgccaattggtcgtacaccgcgttccaatcctgca
acgtatactggtgtatttgatgatatccgtgacttattctcgcagacgaacgaggccaaa
gtacgaggctacaagaaaggccgctttagctttaacgttaagggaggtcgttgtgaagct
tgtagaggcgatggcatcatcaagattgagatgcattttctgccggatgtgtatgttcca
tgcgaagtgtgtaaaggcaagcgttataaccgggagaccctagaggttaaatacaaaggg
aaaagtattgccgatgtgctggagatgacggtagaggatgcaacggagttttttgtaaat
attccgaagattcatcgcaagatccagacactgatggatgtaggtttggggtatatcaag
ctgggtcagcctgcgactaccttgtctggcggtgaagcacagcgtgtgaagctagcctcc
gaattgtatcgtcgcagtacgggcaaaaccatttatattttggacgagccgacaaccggc
ctgcatgttcacgatattgaccgattattgacggtgctgcatcgtttggttgattcagga
gagacggtgctggtcattgagcataatctagatgtgattaaaacagccgattatctaatt
gatttgggaccggaaggcggaagtggcggtggaacgatcttggctaccgggacaccggag
cagctcgtgaaagtcgaagaatcctatacaggtcgatacttaaagccgatccttgaacgg
gatacagagcgtagtcaagcgcttcagacagtcgatctatag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (19)   
   Pfam (19)   
All databases (26)   

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