KEGG   Paenibacillus polymyxa CR1: X809_41675
Entry
X809_41675        CDS       T02956                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
ppol  Paenibacillus polymyxa CR1
Pathway
ppol03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppol00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    X809_41675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppol03019]
    X809_41675
   03009 Ribosome biogenesis [BR:ppol03009]
    X809_41675
Enzymes [BR:ppol01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     X809_41675
Messenger RNA biogenesis [BR:ppol03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     X809_41675
Ribosome biogenesis [BR:ppol03009]
 Prokaryotic type
  rRNA helicases
   X809_41675
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19 Helicase_RecD AAA_22 ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: AIW42356
Position
5915275..5916720
AA seq 481 aa
MSQKHFTDYALSEEIVRALNSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGI
PICELVDWNENKPQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELK
QRTHVAVGTPGRVLDHIERGTLSLDRIAYLVIDEADEMLNMGFIEQVQSIIQALPSDRVT
MLFSATFPEDVATLSRKYMKDPVRIEIKATGITTATIDHSLIQVKESDKLALLQDLLIVE
NPDSCIIFCRTQENVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIATD
VAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAISLITPKDGRRLADIEAY
IGFAIPQVKAPSEEAVDLRREDFEQKLHVKTALKKDKREQLNQQIMKLNFNGGKKKKLRA
VDFVGTIAKLDGVTADDIGIITILDYATDVEILNGKGPLVLEIMKNTTVKGKLLKVRKGN
K
NT seq 1446 nt   +upstreamnt  +downstreamnt
atgagtcagaagcattttacagattacgcattaagtgaagaaattgtaagagcgctcaat
agcttgggctatgagacgccaacagagattcagacggaagttattcctgttgcgcttgag
aagaaggatcttgtcgccaaatcgcaaacaggtagcggcaaaacagcagcatatggtatt
ccaatttgtgagctagtagattggaatgagaataagccccaagctttaattctgacgcca
acccgtgaactcgcattacaggtcaccgaagacatcacgaatattggacgctttaagcgg
ataaaagcaacacccctttatggaaaacatccttttcatatccaaaaggctgagttaaaa
caaagaacgcatgtggctgtaggtacgccaggacgtgtactggaccatatcgaacgaggc
acgctatcgttagatcggattgcctacctcgtgattgatgaagctgacgagatgctgaat
atgggctttatcgagcaagtccagtcgattattcaagcgctgcctagtgaccgggttaca
atgctattctccgctaccttccctgaggatgtagccacactgtcacgtaaatatatgaaa
gatcctgttagaattgagattaaagcgactggtataacgaccgccacaattgatcactct
cttattcaggtgaaggagtcagacaagctggcactactgcaagatctgctcattgttgag
aatcctgacagctgcattattttctgtcgtacgcaggagaatgtagatacattattcaga
gcattggctgatctcgaatatccatgtgatcgcattcatggtggcatggagcaagacgag
cgatttgaggtaatgaatgcattcagaaggggtcaattccgttacttgattgcgacagat
gttgccgccagagggattgatatcacgaatatcacccatgtcattaactacgatattccc
cttgaaaaggaaagctatgttcaccgtacaggacgtacgggacgtgctggcaaaacgggg
aaagccatttccctcatcactcctaaggatggcagaagattagctgatattgaagcatat
attggattcgcgattccgcaggtaaaggccccctcagaagaggctgttgatctccgtaga
gaagattttgagcagaaactgcatgtaaaaaccgcactcaaaaaagataagcgcgagcaa
ttaaaccaacagattatgaagctgaattttaacggcggtaagaagaaaaaacttagagct
gtcgacttcgtggggaccatcgctaagcttgacggagtcaccgcagatgatatcgggatc
attacgattctggattatgcgacagatgttgagattctgaatggtaaaggtccactggtg
cttgagattatgaagaatacgaccgtaaagggtaagctgttaaaggtacgcaaagggaat
aagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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