KEGG   Paenibacillus polymyxa Sb3-1: RE92_05895
Entry
RE92_05895        CDS       T03812                                 
Name
(GenBank) DNA polymerase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ppoy  Paenibacillus polymyxa Sb3-1
Pathway
ppoy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppoy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RE92_05895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppoy03400]
    RE92_05895
Enzymes [BR:ppoy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RE92_05895
DNA repair and recombination proteins [BR:ppoy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RE92_05895
SSDB
Motif
Pfam: LigD_Prim-Pol
Other DBs
NCBI-ProteinID: AJE50624
Position
1321253..1322155
AA seq 300 aa
MGRAVKGTITIEGHEIAITNPDKPLWPEAGVTKALYLRKLAVLAPFLLKYCHQRLLTVIR
WPHGIHGDFFYQKNAPHPRPDYIETALHDGIEYIVLGKLPQLLWLGNQAALEFHPSLHLA
GSQLPCEWMIDLDPSREVEPRIMEAASIVGEVLASLGLDSVPKTSGATGVQIIVPIRPGI
TFDELRSIGLLVGQFVTEKHPHLFTLERLKKDRGTAIYFDYLQHYQGKTLAAPYTPRARP
GATVSTPLTWEEVRQDVSPLDYHLLNIEERLNQIGDLIDKVPPQPVEDLLKHMRSKTHPT
NT seq 903 nt   +upstreamnt  +downstreamnt
atgggacgagctgttaaaggtacgattacgattgaaggtcacgaaattgcgatcacaaac
ccggataaaccgctgtggcccgaagcaggtgtaactaaggcgctatatcttcgcaagctt
gcggtattggcccccttcctgctcaaatattgccatcagcgtctactgactgtcatccgt
tggccacatgggattcatggggactttttttatcagaaaaatgccccacatcctcggcca
gactacattgaaaccgctctgcatgatggcattgagtatatcgtgcttggaaagctgccc
caactactctggctcggtaatcaagctgcgttggaatttcatccctctctgcacctagca
ggaagccaactgccctgtgaatggatgattgatcttgatccatccagagaggtcgagcca
cgcattatggaggctgcctccattgtaggcgaagtattagcttcgcttgggttggactct
gtccccaaaacctccggggccacgggtgtacaaattatcgtcccgatccgtccaggcata
acctttgacgagcttcgcagcatcggactgttggttggacaatttgtaacggaaaagcac
ccgcatctattcacactggaacgattaaagaaggatcgcggaacagccatttattttgat
tatttgcagcattatcagggaaaaaccttagccgctccttatactccacgggcacgtccc
ggcgctacggtctccactccactaacctgggaagaggtacggcaggatgtgtcaccactg
gattaccatttgctgaatattgaagaacggttaaaccagataggcgacttgatcgacaag
gttcctccccagcctgtagaggacctcctcaagcatatgcgttccaaaacacacccaacc
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

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