KEGG   Paenibacillus polymyxa Sb3-1: RE92_14625
Entry
RE92_14625        CDS       T03812                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ppoy  Paenibacillus polymyxa Sb3-1
Pathway
ppoy03030  DNA replication
ppoy03410  Base excision repair
ppoy03420  Nucleotide excision repair
ppoy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppoy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RE92_14625
   03410 Base excision repair
    RE92_14625
   03420 Nucleotide excision repair
    RE92_14625
   03430 Mismatch repair
    RE92_14625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppoy03032]
    RE92_14625
   03400 DNA repair and recombination proteins [BR:ppoy03400]
    RE92_14625
Enzymes [BR:ppoy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     RE92_14625
DNA replication proteins [BR:ppoy03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     RE92_14625
DNA repair and recombination proteins [BR:ppoy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     RE92_14625
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RE92_14625
   MMR (mismatch excision repair)
    DNA ligase
     RE92_14625
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RE92_14625
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 HHH PTCB-BRCT DNA_ligase_ZBD DUF669
Other DBs
NCBI-ProteinID: AJE52209
Position
3328874..3330889
AA seq 671 aa
MNPMHRMEQLVAELNTYNYHYYTLDDPQISDKEYDVLYDELVALEQTSGLVLPDSPTQRV
GGEILKGFTPHRHLAPLWSLDKAQNMEQLRAWNARVVKLVNDYNTKNPEQPLPSPGYAIE
LKFDGLTLNLTYTDGQLVQASTRGNGVVGEGILAQVKTIKSVPLKIPFQNGTIEVQGEGI
MNLSVLSNYNEKAVEPLKNARNAAAGALRNLNPKVTAERRLNAFFYNVGYADRIQFNSHQ
EMMTFLRENHFKVNPYLTYFDNFDDVMEQLIEIEESRAGLDYLIDGAVLKITDMRTREIL
GYTDKFPRWAVAYKFEAEETTTVLNSVEWNVGRTGKITPLARVEPVELAGVTVQNCTLNN
AGDIERKNLKFALGARVFIRRSNDVIPEILGKVTSENDGEEIVVPEHCPACGFPLQQRGA
HLFCDNKLGCKPQIVARISHFASRDAMDIETFSDKTAIQLHDELGVREPADLYTLQYDDL
VKLERFGEKKANNLLVALEKSKERDLASFLYALGIPNTGKATTRMLAEHYRDLHKTMSAT
VDELIELPDVGGIVAESIVAFFADPFTQAGIEKMLSLGVKAQAPEAPQVKKTDSFFSGKT
VVLTGTLHQLTRDEAASRLEALGAKVAGSVSKKTDLVIAGEKAGSKLAKAQQLGIDTIED
EDEFIRLLEQE
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgaacccaatgcacaggatggagcagcttgttgctgaactgaacacatataactatcac
tactatacattggatgacccccagatcagcgacaaagaatatgatgtgctttatgacgaa
ctggtagcgcttgaacaaacaagcggtcttgttctgccagattcgccaacacagcgtgtg
ggcggggagatactcaagggcttcacaccgcatcgccacctcgctccattatggagcctt
gataaagctcagaatatggagcagctgcgtgcatggaacgcgcgtgtcgtgaagctggtc
aatgattacaataccaagaacccggagcaacccttgccatctccaggctatgcgatagaa
ctaaaatttgatggactgacgctgaacctgacgtacacggatggacaactggtgcaggct
tctacccgtggtaatggtgtggtaggtgaggggatactggcacaggtaaagacgattaaa
tccgtgccacttaaaattccttttcaaaatggaactattgaggtgcagggagaagggatc
atgaatctctccgtactgtccaattataatgagaaggccgtagagcctcttaaaaatgca
cgaaatgccgcagcaggggctttgcgtaacttgaatcccaaagtaacagcagagcggcgt
ttgaatgcatttttctataatgtaggctatgcggaccgtattcagtttaacagccaccag
gagatgatgaccttcctgcgtgaaaatcatttcaaggtaaacccatacctaacttacttt
gataattttgatgatgtaatggagcagttaattgagattgaagaatcccgtgccggtttg
gattatcttattgatggggcagtattgaaaattacagatatgcgcacacgtgagattctc
ggatataccgataaattcccacgctgggcggtggcatataagttcgaagcagaggaaacg
actacggtgcttaactcggtcgagtggaatgtaggaagaaccgggaagatcactccactg
gctagggtagaaccggtagagctggcgggagtcactgtacaaaattgtacgctgaacaat
gctggtgatatcgagcgtaagaacctgaagtttgccttgggggcgcgtgtgtttattcgt
cgctcaaacgatgttattcctgagattttgggaaaagtaacatctgagaacgatggggag
gaaattgttgttccagagcattgtccagcttgtggatttccgttgcagcagcgaggcgcc
catttattttgtgacaataagctaggttgtaaaccacaaattgtggcccgcatttcccat
tttgcatcacgtgatgccatggacattgagacgttcagtgacaaaacagctatccaactg
catgatgaattgggagttcgtgaacctgcggatctgtatacactgcaatatgatgatctt
gtgaagctggagcggtttggtgagaaaaaggccaataacctcttggtggcacttgaaaag
agtaaggagagagatttggcctctttcctttatgctctgggcataccgaataccggtaaa
gcgacgacacgcatgctggctgaacactatcgtgatttgcacaagacgatgtccgctacg
gtggatgaactgatagaactgccggatgtaggtgggattgtagctgaaagcattgttgca
ttctttgccgatccatttactcaagcagggattgaaaagatgctgtctctaggagtaaaa
gctcaggcccccgaagctccacaggtgaaaaagacagacagctttttcagtgggaaaacg
gttgtgcttacaggtaccttgcatcagcttacgcgtgatgaagctgcatcaaggttggag
gcgctgggagccaaagttgccggatctgtatcgaaaaagacggatctagtcatagctggt
gaaaaggctgggagcaagctggctaaggcacaacagctcggaatcgacaccatagaagat
gaggatgaattcatcagactgttagaacaagaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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