KEGG   Paenibacillus polymyxa Sb3-1: RE92_14785
Entry
RE92_14785        CDS       T03812                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ppoy  Paenibacillus polymyxa Sb3-1
Pathway
ppoy03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ppoy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RE92_14785
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppoy03021]
    RE92_14785
   03400 DNA repair and recombination proteins [BR:ppoy03400]
    RE92_14785
Enzymes [BR:ppoy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RE92_14785
Transcription machinery [BR:ppoy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RE92_14785
DNA repair and recombination proteins [BR:ppoy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RE92_14785
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid
Other DBs
NCBI-ProteinID: AJE52236
Position
3364165..3367779
AA seq 1204 aa
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DLDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNQPDWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSAEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEEEGSNMILRNPNEAISAYQRGTAGLHARVAIP
VKALNKTSFTEKQQDAMLITTVGKIIFNEIFPASFPYINDATRANLLYGTAEEFFVYEKG
VNLTEAIQNAPQAGGVGKDYLGNIIARCFEIYHTTETAVILDKIKQLGFTYSTRAGVTVA
VADVVVPQEKQDILKASDDKAQVVTNQYRRGLITNEERYDRIIDIWSKAKDDITDILMKS
MDRYNSIMMMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFTVSRIQDGKEVIEDL
YDRLEGRYCFETVRHPETGEILARRNELIDSNKAEAIVKAGVDKVQIRSVLSCRAKHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEVREGKDRREIDIQGEAETKTYSVTYGSRLRVSEGMTVEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
IDAGDTTLLPGSFVDVHEYENANKIAILSGQEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSVKFAQPEEGQSSSEELEP
ISAE
NT seq 3615 nt   +upstreamnt  +downstreamnt
ttgttggacgttaacaatttcgaatatatgaaaatcgggcttgcttcccccgaaaagatt
cgttcttggtcccgcggagaagtcaaaaaaccggagacgattaactatcgtacgcttaaa
ccggaaaaagaaggactattttgcgagaaaattttcggacctacgaaagattgggaatgt
cactgtggtaagtacaaacgtgtacgctataaaggtgttgtctgtgaccgctgtggagta
gaagttactcgcgctaaggttcgccgtgagcgtatgggccacattgagttggctgctcct
gtatcgcacatttggtacttcaaaggcattccgagtcgtatgggtcttgctcttgatatg
tctccaagatctttggaagagatcatttacttcgcatcttatgttgtaaccgatccagga
gatacgcctttggagaaaaagcaactcctgtccgagaaagaataccgcagctatcgtgag
aaatatggctacggattccaggcgggaatgggtgctgaagcggttaaaaagcttcttcaa
gatttagatatagacaaagaattagaattcttgaaagaagagctacgtacagctcaaggg
caacgtcgaaaccgtgcgatcaaacgccttgaagttattgaggcattccgtaactctggt
aaccaaccggattggatgatcatggacgtactgcctgttattcctcctgagcttcgtcca
atggtacagctggacggtggacgttttgctacttctgaccttaatgatctgtatcgtcgt
gttattaaccgtaataaccgtctgaaacgcttgttagatctgggtgcaccagatattatc
gtgcaaaatgaaaaacggatgctgcaggaagctgttgacgctctgattgataatggtcgt
cgtggtcgtcctgttacaggtccgggtaatcgtcctttgaaatccctcagccatatgctg
aaaggtaaacaaggacgtttccgtcaaaacttgctcgggaaacgtgttgactattccggt
cgttccgttatcgtagtaggcccgtacttgaagatgtaccaatgtggtctgccgaaagaa
atggcgctggagctgttcaagccttttgttatgaaagagcttgttaacaaaggtttggca
cacaacattaagagcgcgaagcgtaaagtagagcgtgtgagtgctgaagtgtgggatgta
ctcgaagaagtaatcaaggagcatccggttcttctaaaccgtgcccctacgctgcataga
ctaggtattcaagcgtttgaaccgatcttggttgaaggtcgtgcgattcgtttgcatccg
ctcgtatgtacggcatacaatgctgactttgacggtgaccaaatggcggttcacgttccg
ctgtctgcagaggctcaagcggaagctcgtttgctcatgctggcatccggcaacattttg
aatccgaaagacggcaagcctgttgttactccttcccaggatatggtccttggctcattc
tatttgacaatggacaacaaggaagaagaaggaagtaacatgatccttcgcaacccgaat
gaggctatctcggcttaccaacgcggaacagcgggtcttcatgctcgtgtagctattccg
gttaaagctttgaataaaacgagctttacagagaagcagcaggatgcgatgttgattaca
accgtgggtaaaattatctttaatgagattttcccagcaagcttcccgtatatcaatgac
gctactcgtgccaacctgctctatggtactgctgaagagttctttgtttacgagaaaggt
gtaaatcttactgaagccatccagaacgctccgcaagctggtggagtgggcaaggattac
cttggtaatatcatcgcccgttgctttgagatttaccatacgacagaaaccgccgtgatt
ttggataagatcaaacagcttggctttacgtattctactcgtgcaggtgtgacggttgct
gtggcagacgtagttgtacctcaagagaaacaggatattcttaaggcatctgatgataaa
gcacaagtcgtgaccaatcagtaccgtcgtggtctgattacgaacgaggaacgctatgac
cggattattgatatttggtctaaggctaaagacgatattacagacattttgatgaaatcc
atggatcgctacaactctatcatgatgatggttgactctaaagcgcgtggtaacaaatca
cagattacccagcttggcggtatgcgtggactgatggcgaatccatctggtcgtattatc
gagctcccaatcaaatcgaacttccgtgaaggtctgacagtactcgagtactttatctcc
actcacggagcgcgtaaaggtttggcggatacagccttacgtacggctgactctggttac
ctaactcgtcgtctcgttgatgtggcgcaggatgttatcgtgcgcgaagatgactgcgga
acggataaaggctttacagtaagtcgcatccaggacggtaaagaagtcattgaggacctg
tacgatcgtctggaaggtcgctattgcttcgaaaccgtacgtcatcctgaaacgggtgaa
atcttggctagacgcaacgaactgattgactccaacaaagctgaagcgatcgttaaagct
ggtgtggataaagttcaaattcgttccgtactaagttgccgtgctaaacatggcgtctgc
aaaaaatgttacggccgtaatctggctactggcaagcacgttgagattggtgaagcggtt
ggtattatcgcggctcaatccatcggtgaaccagggacacagctcactatgcgtacgttc
cacacaggtggtgtagcgggcgacgatatcacccaaggtttgcctcgtatccaggagctt
tttgaagcgcgtaatcctaaaggtcaggcaaccatcagtgaaattgatggtgtagttaaa
gaggttcgtgaagggaaagaccgtcgcgaaatcgacattcagggtgaagctgaaacaaaa
acctattcggtcacttatggttcacgtctacgcgtaagcgaaggcatgactgtggaagcc
ggggacgaactgacggatggttcgattgaccctaaagaaatgctgcgtataaaaggtatt
cgcggggtgcagaactatatccttcaggaagttcaacgtgtataccggaaccagggtgta
gaaatcaacgacaagcacgtagaagttatgattcgtcaaatgttgcgtaaaattcgtatc
attgatgcgggcgacacgacactgcttccaggttcatttgttgatgtgcatgagtatgaa
aatgcaaacaagatagcaattctcagcggccaagaaccagcggtagccaaaccagttctt
cttggtatcaccaaggcgtctttggaaactgactccttcttgtcagcagcttccttccag
gaaactactcgtgtcctgacagatgcagctatcaaaggaaaagtcgatcagttgcttgga
ttgaaagagaatgtaattatcggtaaattgatccctgcgggaacaggtatgaaccgttac
cgtagcgtgaaatttgcccagcctgaagaggggcaatcctcatctgaggagctcgaaccc
atttcagctgagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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