KEGG   Physcomitrium patens (spreading earthmoss): 112273924
Entry
112273924         CDS       T01041                                 
Name
(RefSeq) protein CLP1 homolog
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    112273924
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppp03019]
    112273924
Enzymes [BR:ppp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     112273924
Messenger RNA biogenesis [BR:ppp03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     112273924
SSDB
Motif
Pfam: CLP1_P Clp1 CLP1_N nSTAND3
Other DBs
NCBI-GeneID: 112273924
NCBI-ProteinID: XP_024358750
Position
21:complement(4167002..4171709)
AA seq 443 aa
MAASTGTGVGGGGGTGTGGTRKFKLQKESELRVEVGMDSPLKLQLVIGTAEVFGTELPPM
FWMTFPAAHKFAVFTWHGCTIELDGISEVAYVADETPMVSYVNVHAVLERRRRKAKEALA
ASDAPSTNPPAGPRCIVVGPTDSGKSCLVRMLLGWAAREGWKPTYADLDIGQGSITIPGT
VAATPVEMPIHPIEGVPLDLPLVYFYGHTTPSVNVDLYKVLVKELARTLDIQLVSNSEVQ
AAGMVINTMGWVDGVGYELLLHAIETLRADVVLVLGQEKLYSMLQEVLKVRPGVDIVKLH
KSGGVVNRNSKYRQRTRVLKTKEYFYGLSNDLSPHSSVANFSDLQVFRIGGGPQAPRSAL
PIGAEPTADPTRVVPVGFSRDLLHVVLAVSFAKDPEHLLSSNVAGFIYINEIDMQRKKVT
YMAPCPGPLPSQLLLAGSLAWTE
NT seq 1332 nt   +upstreamnt  +downstreamnt
atggcagcgagcacgggaactggagttgggggcgggggcggaaccgggacaggagggact
cgcaagttcaagctgcagaaggagagtgagctgcgggtggaagtcggcatggattcgccg
ctcaaattgcagcttgtgattgggacggcagaggtttttggcacggaactgccgcccatg
ttctggatgactttccctgctgcgcacaagtttgctgtatttacttggcatggctgcacg
attgagttggatggtatctccgaagttgcctatgttgccgacgagactccaatggtcagc
tatgtcaatgtgcatgcagtccttgaacgaaggcgcagaaaagctaaggaggctctcgct
gcatctgatgctcccagcaccaacccccctgcaggtcccagatgtatagtggtagggcca
acagattctggaaagagctgcttagtgcggatgttacttggttgggccgccagagaaggt
tggaagccaacgtatgcagatttagacataggccagggctcaatcactattcccggcaca
gttgctgcaacgcctgttgagatgcccatacaccctatcgagggagtcccgctcgacctg
cccctggtgtacttttatggacacactactccaagtgtgaacgtagacttatataaagtg
ttggtgaaagagttggcgcgtactttggatatacagttagtctcaaattctgaagttcag
gctgccggcatggttatcaatactatgggttgggtggatggagttggctatgagttgcta
ttgcatgccatcgagacattgcgagctgatgttgtattggtacttggacaggaaaaatta
tacagcatgcttcaggaagtcctgaaagtaaggcctggtgttgacattgtgaaattacac
aagtctgggggcgttgtgaatcgtaactcaaaatatcgacaacggacacgtgtcctaaaa
acaaaggagtacttttatgggttgtcaaatgatctatctccccattcctcagttgccaac
tttagcgacctgcaagtattccgtattggtggtggtccacaagccccccgatcagcatta
ccaattggtgcagagcctacagcagatcccacacgcgttgtacctgtgggtttcagccgc
gacttgctacacgttgtactcgcggtttcatttgccaaagaccctgagcatctcctttcg
agtaatgttgctggcttcatatacatcaacgagattgacatgcaaaggaaaaaggtgaca
tacatggcaccatgtcctggaccactaccaagtcagttacttctggcaggttcgcttgct
tggacagagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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